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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033518 through 18771 annotations produced 2 hits



AOP2-related /// peroxiredoxin 2540 /// peroxiredoxin 2540 (CG12896 /// Prx2540-1 /// Prx2540-2):

Annotation Number : CG11765
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033518 /// FBgn0033520 /// FBgn0033521
Gbrowse : chr2R:6306222-6307278 (+) // 100.0 // /// chr2R:6311940-6312556 (+) // 61.75 // /// chr2R:6314477-6315420 (-) // 83.99 //
Probeset : 1631628_s_at
Accessions : protein= NP_523683; /// NP_610584; /// NP_724931;, nucleotide= NM_078959; /// NM_136740; /// NM_165769;
Pathway : 0005829 // cytosol // inferred from direct assay
Interpro : 0004601 // peroxidase activity // inferred from sequence or structural similarity /// 0004601 // peroxidase activity //
FlyMine data for FBgn0033518 /// FBgn0033520 /// FBgn0033521.
BioGrid reports that CG11765 interacts with CG12470 CG14534 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 54 of 4 0.30Down
Head639 314 of 4 1.60Up
Eye173 424 of 4 0.43Down
Thoracicoabdominal ganglion201 144 of 4 0.50Down
Salivary gland309 314 of 4 0.78None
Crop885 374 of 4 2.20Up
Midgut673 604 of 4 1.70Up
Tubule887 2414 of 4 2.20Up
Hindgut345 304 of 4 0.90None
Heart727 434 of 4 1.82Up
Fat body1393 1584 of 4 3.49Up
Ovary133 64 of 4 0.30Down
Testis1461 484 of 4 3.70Up
Male accessory glands127 124 of 4 0.30Down
Virgin spermatheca1517 1104 of 4 3.80Up
Mated spermatheca655 574 of 4 1.64Up
Adult carcass939 244 of 4 2.40Up
Larval CNS40 54 of 4 0.10Down
Larval Salivary gland82 104 of 4 0.21Down
Larval midgut1637 3854 of 4 4.11Up
Larval tubule369 234 of 4 0.90None
Larval hindgut647 1614 of 4 1.62None
Larval fat body2694 4004 of 4 6.80Up
Larval trachea121 474 of 4 0.30Down
Larval carcass219 744 of 4 0.55None
S2 cells (growing)590 524 of 4 1.48Up
Whole fly398 404 of 4



peroxiredoxin 2540 (Prx2540-2):

Annotation Number : CG11765
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033518
Gbrowse : chr2R:6306222-6307278 (+) // 100.0 // /// chr2R:6311940-6312556 (+) // 61.75 // /// chr2R:6314477-6315420 (-) // 83.99 //
Probeset : 1633471_at
Accessions : protein= NP_523683;, nucleotide= NM_078959;
Pathway : 0005829 // cytosol // inferred from direct assay
Interpro : 0004601 // peroxidase activity // inferred from sequence or structural similarity /// 0004601 // peroxidase activity //
FlyMine data for FBgn0033518.
BDGP gene expression has embryonic in situ data for Prx2540-2: 29 pix of staining in 12 body parts.
BioGrid reports that CG11765 interacts with CG12470 CG14534 .
TRiP has 1 RNAi stocks for FBgn0033518 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033518 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 34 of 4 0.00None
Head408 884 of 4 1.00None
Eye78 144 of 4 0.20None
Thoracicoabdominal ganglion15 04 of 4 0.00None
Salivary gland304 204 of 4 0.76None
Crop186 194 of 4 0.50None
Midgut1654 594 of 4 4.10Up
Tubule556 854 of 4 1.40None
Hindgut269 254 of 4 0.70None
Heart348 214 of 4 0.87None
Fat body547 1174 of 4 1.37None
Ovary48 24 of 4 0.10None
Testis1670 584 of 4 4.20Up
Male accessory glands55 44 of 4 0.10None
Virgin spermatheca1335 1164 of 4 3.33Up
Mated spermatheca719 804 of 4 1.79None
Adult carcass251 314 of 4 0.60None
Larval CNS6 32 of 4 0.02None
Larval Salivary gland75 74 of 4 0.19None
Larval midgut4487 4774 of 411.19Up
Larval tubule246 554 of 4 0.60None
Larval hindgut1612 3714 of 4 4.02Up
Larval fat body210 254 of 4 0.50None
Larval trachea148 374 of 4 0.37None
Larval carcass95 334 of 4 0.24None
S2 cells (growing)97 74 of 4 0.24None
Whole fly400 1314 of 4

Looking for FBgn0033518. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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