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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033538 through 18771 annotations produced 1 hits



(CG11883):

Annotation Number : CG11883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033538
Gbrowse : chr2R:6505168-6528718 (+) // 100.0 //
Probeset : 1636569_a_at
Accessions : protein= NP_001097260; /// NP_610598; /// NP_724960;, nucleotide= NM_001103790; /// NM_136754; /// NM_165793;
Interpro : 0008253 // 5'-nucleotidase activity // inferred from sequence or structural similarity /// 0008253 // 5'-nucleotidase ac
FlyMine data for FBgn0033538.
BDGP gene expression has embryonic in situ data for CG11883: 17 pix of staining in 8 body parts.
BioGrid reports that CG11883 interacts with CG15735 CG4328 CG12470 CG3193 .
TRiP has 2 RNAi stocks for FBgn0033538 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033538 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain299 64 of 4 3.40Up
Head93 74 of 4 1.00None
Eye45 24 of 4 0.51Down
Thoracicoabdominal ganglion272 104 of 4 3.10Up
Salivary gland24 32 of 4 0.27Down
Crop42 44 of 4 0.50Down
Midgut14 03 of 4 0.20Down
Tubule20 02 of 4 0.20Down
Hindgut35 14 of 4 0.40Down
Heart12 11 of 4 0.14Down
Fat body12 21 of 4 0.14Down
Ovary136 44 of 4 1.50Up
Testis14 13 of 4 0.20Down
Male accessory glands60 44 of 4 0.70Down
Virgin spermatheca22 14 of 4 0.25Down
Mated spermatheca23 14 of 4 0.27Down
Adult carcass72 54 of 4 0.80None
Larval CNS204 354 of 4 2.31Up
Larval Salivary gland86 34 of 4 0.97None
Larval midgut8 10 of 4 0.10Down
Larval tubule16 33 of 4 0.20Down
Larval hindgut11 32 of 4 0.13Down
Larval fat body121 104 of 4 1.40Up
Larval trachea36 84 of 4 0.41Down
Larval carcass81 74 of 4 0.92None
S2 cells (growing)128 44 of 4 1.44Up
Whole fly88 34 of 4

Looking for FBgn0033538. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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