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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033541 through 18771 annotations produced 1 hits



(CG12934):

Annotation Number : CG12934
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033541
Gbrowse : chr2R:6536416-6537250 (+) // 100.0 //
Probeset : 1633862_at
Accessions : protein= NP_610601;, nucleotide= NM_136757;
FlyMine data for FBgn0033541.
BioGrid reports that CG12934 interacts with CG7957 CG9842 CG2238 CG3937 .
VDRC has 3 RNAi stocks for FBgn0033541 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head8 40 of 4 0.40None
Eye3 10 of 4 0.16Down
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland7 30 of 4 0.34Down
Crop7 31 of 4 0.30Down
Midgut134 84 of 4 6.50Up
Tubule3 00 of 4 0.20Down
Hindgut1 00 of 4 0.10Down
Heart1 10 of 4 0.08Down
Fat body4 40 of 4 0.21Down
Ovary0 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands4 20 of 4 0.20Down
Virgin spermatheca5 10 of 4 0.28Down
Mated spermatheca2 10 of 4 0.12Down
Adult carcass5 20 of 4 0.30Down
Larval CNS1 00 of 4 0.08Down
Larval Salivary gland5 10 of 4 0.24Down
Larval midgut5332 2454 of 4257.31Up
Larval tubule12 30 of 4 0.60None
Larval hindgut15 21 of 4 0.74None
Larval fat body1 00 of 4 0.10Down
Larval trachea2 20 of 4 0.12Down
Larval carcass4 10 of 4 0.21Down
S2 cells (growing)1 00 of 4 0.08Down
Whole fly20 31 of 4

Looking for FBgn0033541. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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