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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033544 through 18771 annotations produced 1 hits



(CG7220):

Annotation Number : CG7220
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033544
Gbrowse : chr2R:6618860-6625881 (+) // 100.0 //
Probeset : 1637771_s_at
Accessions : protein= NP_001097261; /// NP_610604; /// NP_724964; /// NP_724965; /// NP_995809;, nucleotide= NM_001103791; /// NM_136760; /// NM_165795; /// NM_165796; /// NM_206087;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0033544.
Homophila reports that CG7220 is a close match (1e-12) to human gene RAD6A;UBE2A (NP_003327), a gene associated with Mental retardation, X-linked syndromic (3).
VDRC has 3 RNAi stocks for FBgn0033544 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain484 94 of 4 1.30Up
Head937 374 of 4 2.50Up
Eye4256 1954 of 411.44Up
Thoracicoabdominal ganglion572 134 of 4 1.50Up
Salivary gland886 364 of 4 2.38Up
Crop366 104 of 4 1.00None
Midgut1251 264 of 4 3.40Up
Tubule717 284 of 4 1.90Up
Hindgut469 264 of 4 1.30Up
Heart274 164 of 4 0.74Down
Fat body243 314 of 4 0.65Down
Ovary297 64 of 4 0.80Down
Testis65 14 of 4 0.20Down
Male accessory glands124 64 of 4 0.30Down
Virgin spermatheca852 1334 of 4 2.29Up
Mated spermatheca442 424 of 4 1.19None
Adult carcass255 74 of 4 0.70Down
Larval CNS258 164 of 4 0.69Down
Larval Salivary gland266 204 of 4 0.72Down
Larval midgut1623 844 of 4 4.36Up
Larval tubule1777 284 of 4 4.80Up
Larval hindgut659 444 of 4 1.77Up
Larval fat body596 1084 of 4 1.60None
Larval trachea308 1234 of 4 0.83None
Larval carcass222 234 of 4 0.60Down
S2 cells (growing)243 84 of 4 0.65Down
Whole fly372 74 of 4

Looking for FBgn0033544. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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