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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033547 through 18771 annotations produced 1 hits



(CG12935):

Annotation Number : CG12935
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033547
Gbrowse : chr2R:6696897-6698160 (+) // 100.0 //
Probeset : 1630110_at
Accessions : protein= NP_610609;, nucleotide= NM_136765;
FlyMine data for FBgn0033547.
BioGrid reports that CG12935 interacts with CG8599 .
VDRC has 4 RNAi stocks for FBgn0033547 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 ± 14 of 4 0.90None
Head51 ± 54 of 4 0.60Down
Eye31 ± 34 of 4 0.35Down
Thoracicoabdominal ganglion101 ± 34 of 4 1.10None
Salivary gland36 ± 44 of 4 0.41Down
Crop36 ± 14 of 4 0.40Down
Midgut59 ± 44 of 4 0.70Down
Tubule83 ± 64 of 4 0.90None
Hindgut46 ± 14 of 4 0.50Down
Heart46 ± 34 of 4 0.52Down
Fat body60 ± 64 of 4 0.67Down
Ovary185 ± 44 of 4 2.10Up
Testis72 ± 44 of 4 0.80None
Male accessory glands51 ± 54 of 4 0.60Down
Virgin spermatheca58 ± 24 of 4 0.65Down
Mated spermatheca84 ± 64 of 4 0.94None
Adult carcass51 ± 34 of 4 0.60Down
Larval CNS134 ± 204 of 4 1.50Up
Larval Salivary gland58 ± 24 of 4 0.65Down
Larval midgut44 ± 24 of 4 0.49Down
Larval tubule44 ± 14 of 4 0.50Down
Larval hindgut70 ± 44 of 4 0.79Down
Larval fat body54 ± 34 of 4 0.60Down
Larval trachea56 ± 44 of 4 0.62Down
Larval carcass60 ± 104 of 4 0.67None
S2 cells (growing)72 ± 24 of 4 0.80Down
Whole fly89 ± 54 of 4

Looking for FBgn0033547. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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