Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033549 through 18771 annotations produced 1 hits



CG12936 (mms4):

Annotation Number : CG12936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033549
Gbrowse : chr2R:6698598-6699729 (+) // 100.0 //
Probeset : 1625919_at
Accessions : protein= NP_610611;, nucleotide= NM_136767;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electron
FlyMine data for FBgn0033549.
BDGP gene expression has embryonic in situ data for CG12936: 4 pix of staining in 1 body parts.
BioGrid reports that CG12936 interacts with CG12547 .
VDRC has 3 RNAi stocks for FBgn0033549 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.03Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.03Down
Fat body1 ± 00 of 4 0.03Down
Ovary123 ± 94 of 4 2.00Up
Testis23 ± 21 of 4 0.40Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.03Down
Adult carcass2 ± 10 of 4 0.00Down
Larval CNS20 ± 40 of 4 0.34Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut2 ± 00 of 4 0.04Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.02Down
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea18 ± 60 of 4 0.30Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)6 ± 10 of 4 0.11Down
Whole fly61 ± 23 of 4

Looking for FBgn0033549. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime