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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033557 through 18771 annotations produced 1 hits



(CG12325):

Annotation Number : CG12325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033557
Gbrowse : chr2R:6711104-6715149 (+) // 100.0 //
Probeset : 1623924_at
Accessions : protein= NP_610618;, nucleotide= NM_136774;
FlyMine data for FBgn0033557.
Homophila reports that CG12325 is a close match (4e-12) to human gene BRWD3;MRX93 (NP_694984), a gene associated with Mental retardation, X-linked 93, 300659 (3).
BioGrid reports that CG12325 interacts with CG13811 .
VDRC has 3 RNAi stocks for FBgn0033557 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 ± 34 of 4 0.50Down
Head41 ± 24 of 4 0.50Down
Eye27 ± 14 of 4 0.30Down
Thoracicoabdominal ganglion57 ± 24 of 4 0.60Down
Salivary gland45 ± 53 of 4 0.51Down
Crop50 ± 34 of 4 0.60Down
Midgut45 ± 64 of 4 0.50Down
Tubule54 ± 84 of 4 0.60Down
Hindgut32 ± 24 of 4 0.40Down
Heart29 ± 14 of 4 0.33Down
Fat body62 ± 44 of 4 0.69Down
Ovary219 ± 34 of 4 2.40Up
Testis17 ± 04 of 4 0.20Down
Male accessory glands91 ± 64 of 4 1.00None
Virgin spermatheca41 ± 24 of 4 0.46Down
Mated spermatheca69 ± 14 of 4 0.77None
Adult carcass38 ± 24 of 4 0.40Down
Larval CNS132 ± 94 of 4 1.46Up
Larval Salivary gland79 ± 54 of 4 0.87None
Larval midgut42 ± 54 of 4 0.46Down
Larval tubule16 ± 14 of 4 0.20Down
Larval hindgut51 ± 64 of 4 0.56Down
Larval fat body21 ± 44 of 4 0.20Down
Larval trachea91 ± 174 of 4 1.01None
Larval carcass64 ± 154 of 4 0.71None
S2 cells (growing)78 ± 14 of 4 0.87None
Whole fly90 ± 84 of 4

Looking for FBgn0033557. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime