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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033569 through 18771 annotations produced 1 hits



(CG12942):

Annotation Number : CG12942
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033569
Gbrowse : chr2R:6782015-6784727 (+) // 100.0 //
Probeset : 1633166_at
Accessions : protein= NP_610628;, nucleotide= NM_136784;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0033569.
BDGP gene expression has embryonic in situ data for CG12942: 8 pix of staining in 1 body parts.
Homophila reports that CG12942 is a close match (3e-11) to human gene GFI1;ZNF163 (NP_005254), a gene associated with Neutropenia, nonimmune chronic idiopathic, of adults, 607847 (3);Neutropenia, severe congenital, 202700 (3).
BioGrid reports that CG12942 interacts with CG1800 CG17154 CG17855 CG7763 .
TRiP has 1 RNAi stocks for FBgn0033569 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033569 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 ± 14 of 4 0.30Down
Head27 ± 24 of 4 0.20Down
Eye24 ± 14 of 4 0.14Down
Thoracicoabdominal ganglion35 ± 14 of 4 0.20Down
Salivary gland19 ± 42 of 4 0.11Down
Crop37 ± 14 of 4 0.20Down
Midgut23 ± 14 of 4 0.10Down
Tubule26 ± 24 of 4 0.10Down
Hindgut23 ± 14 of 4 0.10Down
Heart19 ± 24 of 4 0.11Down
Fat body24 ± 54 of 4 0.14Down
Ovary475 ± 24 of 4 2.70Up
Testis34 ± 24 of 4 0.20Down
Male accessory glands47 ± 04 of 4 0.30Down
Virgin spermatheca37 ± 34 of 4 0.21Down
Mated spermatheca47 ± 24 of 4 0.27Down
Adult carcass26 ± 34 of 4 0.10Down
Larval CNS167 ± 144 of 4 0.94None
Larval Salivary gland59 ± 34 of 4 0.33Down
Larval midgut31 ± 24 of 4 0.17Down
Larval tubule52 ± 24 of 4 0.30Down
Larval hindgut40 ± 14 of 4 0.23Down
Larval fat body65 ± 24 of 4 0.40Down
Larval trachea80 ± 34 of 4 0.45Down
Larval carcass38 ± 24 of 4 0.22Down
S2 cells (growing)63 ± 24 of 4 0.36Down
Whole fly177 ± 94 of 4

Looking for FBgn0033569. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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