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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033570 through 18771 annotations produced 1 hits

NADH ubiquinone oxidoreductase B14 (CG7712):

Annotation Number : CG7712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033570
Gbrowse : chr2R:6784640-6785388 (-) // 100.0 //
Probeset : 1626331_at
Accessions : protein= NP_610629;, nucleotide= NM_136785;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred fr
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
FlyMine data for FBgn0033570.
BDGP gene expression has embryonic in situ data for CG7712: 11 pix of staining in 17 body parts.
VDRC has 2 RNAi stocks for FBgn0033570 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1143 314 of 4 1.20None
Head1291 594 of 4 1.30None
Eye1374 694 of 4 1.41Up
Thoracicoabdominal ganglion1215 334 of 4 1.20None
Salivary gland1248 604 of 4 1.28None
Crop1120 534 of 4 1.10None
Midgut816 154 of 4 0.80None
Tubule1864 294 of 4 1.90Up
Hindgut1320 264 of 4 1.40Up
Heart1306 754 of 4 1.34Up
Fat body1318 784 of 4 1.35Up
Ovary514 204 of 4 0.50Down
Testis469 104 of 4 0.50Down
Male accessory glands883 324 of 4 0.90None
Virgin spermatheca2228 504 of 4 2.28Up
Mated spermatheca1987 1034 of 4 2.04Up
Adult carcass2079 1204 of 4 2.10Up
Larval CNS588 754 of 4 0.60Down
Larval Salivary gland845 134 of 4 0.87None
Larval midgut829 264 of 4 0.85None
Larval tubule791 554 of 4 0.80None
Larval hindgut1166 454 of 4 1.20None
Larval fat body538 454 of 4 0.60Down
Larval trachea758 734 of 4 0.78None
Larval carcass888 824 of 4 0.91None
S2 cells (growing)518 54 of 4 0.53Down
Whole fly975 1074 of 4

Looking for FBgn0033570. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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