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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033571 through 18771 annotations produced 1 hits



chr2R:6785746-6786563 (-) // 100.0 // (Rpb5):

Annotation Number : CG11979
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632142_at
Accessions : protein= , nucleotide= NP_610630;
Pathway : 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II prom
Interpro : "0005634 // nucleus // inferred from electronic annotation /// 0005665 // DNA-directed RNA polymerase II
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain127 44 of 4 0.40Down
Head159 114 of 4 0.50Down
Eye154 54 of 4 0.51Down
Thoracicoabdominal ganglion113 54 of 4 0.40Down
Salivary gland209 104 of 4 0.70Down
Crop165 24 of 4 0.60Down
Midgut188 54 of 4 0.60Down
Tubule75 104 of 4 0.30Down
Hindgut150 44 of 4 0.50Down
Heart171 124 of 4 0.57Down
Fat body172 174 of 4 0.57Down
Ovary393 24 of 4 1.30Up
Testis86 44 of 4 0.30Down
Male accessory glands416 164 of 4 1.40Up
Virgin spermatheca94 74 of 4 0.31Down
Mated spermatheca118 134 of 4 0.40Down
Adult carcass182 74 of 4 0.60Down
Larval CNS476 284 of 4 1.59Up
Larval Salivary gland277 114 of 4 0.92None
Larval midgut120 64 of 4 0.40Down
Larval tubule105 74 of 4 0.40Down
Larval hindgut168 114 of 4 0.56Down
Larval fat body102 64 of 4 0.30Down
Larval trachea370 624 of 4 1.23None
Larval carcass194 264 of 4 0.65Down
S2 cells (growing)424 24 of 4 1.41Up
Whole fly300 264 of 4

Looking for FBgn0033571. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime