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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033579 through 18771 annotations produced 1 hits



chr2R:7027373-7031176 (-) // 100.0 // ():

Annotation Number : CG13229
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637233_at
Accessions : protein= , nucleotide= NP_610637;
Pathway : 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-
Interpro : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 04 of 4 8.30Up
Head13 12 of 4 3.20Up
Eye11 13 of 4 2.66Up
Thoracicoabdominal ganglion24 14 of 4 5.90Up
Salivary gland8 50 of 4 2.05None
Crop20 23 of 4 4.80Up
Midgut16 20 of 4 3.80Up
Tubule2 00 of 4 0.60Down
Hindgut13 11 of 4 3.20Up
Heart6 12 of 4 1.57None
Fat body5 40 of 4 1.20None
Ovary3 00 of 4 0.80None
Testis17 14 of 4 4.10Up
Male accessory glands23 33 of 4 5.50Up
Virgin spermatheca4 00 of 4 0.98None
Mated spermatheca4 10 of 4 0.95None
Adult carcass11 30 of 4 2.70None
Larval CNS23 94 of 4 5.60Up
Larval Salivary gland6 20 of 4 1.49None
Larval midgut11 20 of 4 2.82None
Larval tubule5 00 of 4 1.20None
Larval hindgut9 01 of 4 2.17Up
Larval fat body13 10 of 4 3.20Up
Larval trachea5 31 of 4 1.35None
Larval carcass7 10 of 4 1.78None
S2 cells (growing)9 00 of 4 2.14Up
Whole fly4 10 of 4

Looking for FBgn0033579. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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