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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033587 through 18771 annotations produced 1 hits


Annotation Number : CG13218
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033587
Gbrowse : chr2R:7120768-7121209 (-) // 100.0 //
Probeset : 1638546_at
Accessions : protein= NP_610644;, nucleotide= NM_136800;
FlyMine data for FBgn0033587.
VDRC has 2 RNAi stocks for FBgn0033587 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.90None
Head6 10 of 4 1.00None
Eye1 00 of 4 0.26Down
Thoracicoabdominal ganglion1 00 of 4 0.20Down
Salivary gland16 20 of 4 2.76Up
Crop5 20 of 4 0.90None
Midgut3 10 of 4 0.50None
Tubule4 00 of 4 0.80Down
Hindgut5 20 of 4 1.00None
Heart6 11 of 4 1.09None
Fat body11 31 of 4 1.97Up
Ovary2 00 of 4 0.40Down
Testis5 10 of 4 0.90None
Male accessory glands12 50 of 4 2.10None
Virgin spermatheca10 10 of 4 1.64None
Mated spermatheca8 00 of 4 1.46Up
Adult carcass15 40 of 4 2.50None
Larval CNS0 00 of 4 0.16Down
Larval Salivary gland6 30 of 4 1.06None
Larval midgut7 20 of 4 1.20None
Larval tubule5 30 of 4 0.80None
Larval hindgut87 74 of 414.52Up
Larval fat body14 31 of 4 2.40None
Larval trachea1 00 of 4 0.25Down
Larval carcass3 10 of 4 0.60None
S2 cells (growing)4 10 of 4 0.68None
Whole fly6 01 of 4

Looking for FBgn0033587. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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