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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033588 through 18771 annotations produced 1 hits



(CG13228):

Annotation Number : CG13228
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033588
Gbrowse : chr2R:7121507-7121915 (+) // 100.0 //
Probeset : 1627190_at
Accessions : protein= NP_610645;, nucleotide= NM_136801;
FlyMine data for FBgn0033588.
BioGrid reports that CG13228 interacts with CG3891 CG5422 .
VDRC has 3 RNAi stocks for FBgn0033588 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.50None
Head13 ± 10 of 4 1.80Up
Eye5 ± 20 of 4 0.80None
Thoracicoabdominal ganglion3 ± 00 of 4 0.50Down
Salivary gland14 ± 80 of 4 1.96None
Crop6 ± 10 of 4 0.90None
Midgut5 ± 20 of 4 0.70None
Tubule2 ± 00 of 4 0.40Down
Hindgut8 ± 20 of 4 1.10None
Heart3 ± 01 of 4 0.53None
Fat body13 ± 50 of 4 1.81None
Ovary2 ± 10 of 4 0.40Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands7 ± 20 of 4 1.10None
Virgin spermatheca9 ± 11 of 4 1.29None
Mated spermatheca6 ± 10 of 4 0.86None
Adult carcass6 ± 20 of 4 0.90None
Larval CNS6 ± 40 of 4 0.92None
Larval Salivary gland7 ± 20 of 4 1.00None
Larval midgut2 ± 00 of 4 0.40Down
Larval tubule9 ± 20 of 4 1.20None
Larval hindgut282 ± 174 of 438.77Up
Larval fat body7 ± 20 of 4 1.00None
Larval trachea11 ± 41 of 4 1.54None
Larval carcass8 ± 20 of 4 1.17None
S2 cells (growing)3 ± 00 of 4 0.42Down
Whole fly7 ± 11 of 4

Looking for FBgn0033588. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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