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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033589 through 18771 annotations produced 1 hits



(CG13227):

Annotation Number : CG13227
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033589
Gbrowse : chr2R:7122758-7123157 (+) // 100.0 //
Probeset : 1630218_at
Accessions : protein= NP_610646;, nucleotide= NM_136802;
FlyMine data for FBgn0033589.
BioGrid reports that CG13227 interacts with CG13721 CG15422 CG17777 .
VDRC has 2 RNAi stocks for FBgn0033589 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head2 ± 10 of 4 0.40None
Eye1 ± 00 of 4 0.21None
Thoracicoabdominal ganglion4 ± 10 of 4 0.90None
Salivary gland7 ± 30 of 4 1.49None
Crop1 ± 00 of 4 0.20None
Midgut5 ± 10 of 4 1.00None
Tubule3 ± 00 of 4 0.60Down
Hindgut4 ± 00 of 4 1.00None
Heart3 ± 10 of 4 0.78None
Fat body5 ± 30 of 4 1.05None
Ovary4 ± 00 of 4 0.90None
Testis6 ± 21 of 4 1.40None
Male accessory glands3 ± 20 of 4 0.80None
Virgin spermatheca3 ± 10 of 4 0.77None
Mated spermatheca3 ± 00 of 4 0.79None
Adult carcass9 ± 30 of 4 2.00None
Larval CNS1 ± 10 of 4 0.35None
Larval Salivary gland2 ± 00 of 4 0.54None
Larval midgut46 ± 64 of 4 9.61Up
Larval tubule5 ± 11 of 4 1.20None
Larval hindgut16 ± 34 of 4 3.48Up
Larval fat body3 ± 10 of 4 0.70None
Larval trachea5 ± 20 of 4 1.10None
Larval carcass9 ± 02 of 4 1.88None
S2 cells (growing)2 ± 00 of 4 0.59None
Whole fly4 ± 21 of 4

Looking for FBgn0033589. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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