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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033590 through 18771 annotations produced 1 hits



(CG13217):

Annotation Number : CG13217
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033590
Gbrowse : chr2R:7123707-7124188 (-) // 99.18 //
Probeset : 1623464_at
Accessions : protein= NP_610647;, nucleotide= NM_136803;
FlyMine data for FBgn0033590.
BDGP gene expression has embryonic in situ data for CG13217: 11 pix of staining in 4 body parts.
BioGrid reports that CG13217 interacts with CG6357 .
VDRC has 2 RNAi stocks for FBgn0033590 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.20None
Head0 ± 00 of 4 0.10None
Eye4 ± 10 of 4 0.31None
Thoracicoabdominal ganglion2 ± 10 of 4 0.20None
Salivary gland17 ± 61 of 4 1.27None
Crop2 ± 10 of 4 0.20None
Midgut3 ± 00 of 4 0.20None
Tubule2 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.30None
Heart4 ± 00 of 4 0.35None
Fat body3 ± 30 of 4 0.25None
Ovary2 ± 10 of 4 0.20None
Testis1 ± 00 of 4 0.10None
Male accessory glands3 ± 10 of 4 0.30None
Virgin spermatheca3 ± 10 of 4 0.22None
Mated spermatheca1 ± 00 of 4 0.10None
Adult carcass5 ± 10 of 4 0.40None
Larval CNS0 ± 00 of 4 0.07None
Larval Salivary gland1 ± 00 of 4 0.11None
Larval midgut9 ± 21 of 4 0.73None
Larval tubule1 ± 00 of 4 0.10None
Larval hindgut172 ± 484 of 412.90Up
Larval fat body1 ± 00 of 4 0.10None
Larval trachea2 ± 20 of 4 0.21None
Larval carcass1 ± 00 of 4 0.13None
S2 cells (growing)1 ± 00 of 4 0.15None
Whole fly13 ± 43 of 4

Looking for FBgn0033590. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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