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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033591 through 18771 annotations produced 1 hits



/// (CG13216 /// DmirCG13216):

Annotation Number : CG13216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033591
Gbrowse : chr2R:7125180-7126499 (-) // 100.0 //
Probeset : 1627299_at
Accessions : protein= NP_610648;, nucleotide= NM_136804;
FlyMine data for FBgn0033591.
BDGP gene expression has embryonic in situ data for CG13216: 11 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0033591 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 2.00None
Head0 ± 00 of 4 0.80None
Eye0 ± 00 of 4 0.57None
Thoracicoabdominal ganglion0 ± 00 of 4 1.20None
Salivary gland5 ± 40 of 4 7.54None
Crop1 ± 00 of 4 1.60None
Midgut1 ± 00 of 4 1.90None
Tubule0 ± 00 of 4 1.10None
Hindgut2 ± 10 of 4 3.10None
Heart1 ± 00 of 4 2.57None
Fat body0 ± 00 of 4 1.21None
Ovary0 ± 00 of 4 1.20None
Testis0 ± 00 of 4 0.80None
Male accessory glands1 ± 00 of 4 2.60None
Virgin spermatheca0 ± 00 of 4 1.18None
Mated spermatheca0 ± 00 of 4 0.96None
Adult carcass1 ± 00 of 4 2.30None
Larval CNS0 ± 00 of 4 0.75None
Larval Salivary gland0 ± 00 of 4 0.89None
Larval midgut1 ± 00 of 4 1.39None
Larval tubule1 ± 00 of 4 1.40None
Larval hindgut0 ± 00 of 4 0.54None
Larval fat body0 ± 00 of 4 1.10None
Larval trachea1 ± 00 of 4 1.43None
Larval carcass0 ± 00 of 4 1.14None
S2 cells (growing)0 ± 00 of 4 0.82None
Whole fly0 ± 00 of 4

Looking for FBgn0033591. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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