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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033599 through 18771 annotations produced 1 hits



(CG13223):

Annotation Number : CG13223
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033599
Gbrowse : chr2R:7144093-7146181 (+) // 100.0 //
Probeset : 1628879_at
Accessions : protein= NP_610656;, nucleotide= NM_136812;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0033599.
BioGrid reports that CG13223 interacts with CG14044 .
VDRC has 2 RNAi stocks for FBgn0033599 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.90None
Head3 00 of 4 2.00None
Eye2 10 of 4 1.53None
Thoracicoabdominal ganglion1 00 of 4 0.90None
Salivary gland6 10 of 4 3.51Up
Crop3 10 of 4 1.60None
Midgut3 11 of 4 2.10None
Tubule2 00 of 4 1.30Up
Hindgut3 11 of 4 1.90None
Heart1 00 of 4 0.95None
Fat body4 21 of 4 2.28None
Ovary1 00 of 4 0.80None
Testis22 04 of 411.90Up
Male accessory glands3 20 of 4 1.90None
Virgin spermatheca1 00 of 4 0.81None
Mated spermatheca1 00 of 4 0.84None
Adult carcass8 21 of 4 4.60None
Larval CNS1 10 of 4 0.83None
Larval Salivary gland1 00 of 4 0.52None
Larval midgut2 10 of 4 1.52None
Larval tubule0 00 of 4 0.30None
Larval hindgut2 00 of 4 1.15None
Larval fat body7 12 of 4 4.10Up
Larval trachea4 00 of 4 2.32Up
Larval carcass2 10 of 4 1.49None
S2 cells (growing)3 11 of 4 1.85None
Whole fly1 00 of 4

Looking for FBgn0033599. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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