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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033601 through 18771 annotations produced 1 hits



CG9076 (Cpr47Ed):

Annotation Number : CG9076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033601
Gbrowse : chr2R:7148817-7149295 (-) // 100.0 //
Probeset : 1636171_at
Accessions : protein= NP_610658;, nucleotide= NM_136814;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0033601.
VDRC has 3 RNAi stocks for FBgn0033601 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 2.30None
Head3 ± 10 of 4 4.90None
Eye1 ± 00 of 4 1.76None
Thoracicoabdominal ganglion2 ± 10 of 4 3.80None
Salivary gland8 ± 20 of 413.00None
Crop3 ± 10 of 4 5.30None
Midgut2 ± 00 of 4 3.50None
Tubule3 ± 00 of 4 5.50Up
Hindgut1 ± 00 of 4 2.80None
Heart1 ± 00 of 4 2.52None
Fat body3 ± 30 of 4 5.76None
Ovary0 ± 00 of 4 1.00None
Testis1 ± 00 of 4 2.40None
Male accessory glands2 ± 00 of 4 4.20Up
Virgin spermatheca3 ± 00 of 4 5.60None
Mated spermatheca4 ± 20 of 4 6.88None
Adult carcass1 ± 00 of 4 2.70Up
Larval CNS2 ± 10 of 4 3.76None
Larval Salivary gland1 ± 00 of 4 2.48Up
Larval midgut4 ± 10 of 4 6.40None
Larval tubule3 ± 10 of 4 5.40None
Larval hindgut2 ± 00 of 4 4.64Up
Larval fat body2 ± 10 of 4 3.60None
Larval trachea4 ± 31 of 4 7.84None
Larval carcass2 ± 10 of 4 3.88None
S2 cells (growing)1 ± 00 of 4 2.40None
Whole fly0 ± 00 of 4

Looking for FBgn0033601. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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