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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033603 through 18771 annotations produced 1 hits



CG13214 (Cpr47Ef):

Annotation Number : CG13214
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033603
Gbrowse : chr2R:7154594-7158248 (-) // 100.0 //
Probeset : 1636853_at
Accessions : protein= NP_610660; /// NP_995817;, nucleotide= NM_136816; /// NM_206095;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0033603.
BioGrid reports that CG13214 interacts with CG2560 CG14534 CG14813 CG15580 CG1675 CG17498 CG17654 CG1837 CG18584 CG2185 CG2331 CG31373 CG31811 CG3424 CG4104 CG5670 CG6513 CG6767 CG7145 CG8893 CG8994 CG9036 CG9083 CG9326 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 20 of 4 0.70Down
Head20 10 of 4 0.70None
Eye23 40 of 4 0.75None
Thoracicoabdominal ganglion101 74 of 4 3.30Up
Salivary gland9 10 of 4 0.30Down
Crop7 20 of 4 0.20Down
Midgut5 10 of 4 0.20Down
Tubule5 00 of 4 0.20Down
Hindgut2 00 of 4 0.10Down
Heart8 10 of 4 0.26Down
Fat body10 50 of 4 0.34Down
Ovary2 10 of 4 0.10Down
Testis3 10 of 4 0.10Down
Male accessory glands10 30 of 4 0.30Down
Virgin spermatheca3 00 of 4 0.11Down
Mated spermatheca2 00 of 4 0.09Down
Adult carcass217 204 of 4 7.00Up
Larval CNS3 30 of 4 0.10Down
Larval Salivary gland9 20 of 4 0.29Down
Larval midgut3 00 of 4 0.11Down
Larval tubule5 20 of 4 0.20Down
Larval hindgut2 00 of 4 0.06Down
Larval fat body2 00 of 4 0.10Down
Larval trachea9 20 of 4 0.29Down
Larval carcass1 00 of 4 0.06Down
S2 cells (growing)4 10 of 4 0.14Down
Whole fly31 30 of 4

Looking for FBgn0033603. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime