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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033607 through 18771 annotations produced 2 hits



(CG9062):

Annotation Number : CG9062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033607
Gbrowse : chr2R:7168484-7171461 (-) // 100.0 //
Probeset : 1634001_at
Accessions : protein= NP_725018;, nucleotide= NM_165814;
FlyMine data for FBgn0033607.
BDGP gene expression has embryonic in situ data for CG9062: 4 pix of staining in 1 body parts.
Homophila reports that CG9062 is a close match (2e-13) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
VDRC has 1 RNAi stocks for FBgn0033607 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 20 of 4 0.20Down
Head27 ± 31 of 4 0.20Down
Eye28 ± 34 of 4 0.21Down
Thoracicoabdominal ganglion36 ± 31 of 4 0.30Down
Salivary gland34 ± 31 of 4 0.26Down
Crop69 ± 84 of 4 0.50Down
Midgut61 ± 44 of 4 0.50Down
Tubule78 ± 64 of 4 0.60Down
Hindgut62 ± 54 of 4 0.50Down
Heart17 ± 13 of 4 0.13Down
Fat body24 ± 30 of 4 0.18Down
Ovary356 ± 54 of 4 2.70Up
Testis27 ± 34 of 4 0.20Down
Male accessory glands28 ± 41 of 4 0.20Down
Virgin spermatheca13 ± 20 of 4 0.10Down
Mated spermatheca18 ± 20 of 4 0.14Down
Adult carcass24 ± 50 of 4 0.20Down
Larval CNS67 ± 54 of 4 0.50Down
Larval Salivary gland59 ± 44 of 4 0.44Down
Larval midgut40 ± 44 of 4 0.30Down
Larval tubule91 ± 54 of 4 0.70Down
Larval hindgut66 ± 34 of 4 0.50Down
Larval fat body43 ± 34 of 4 0.30Down
Larval trachea86 ± 04 of 4 0.64Down
Larval carcass46 ± 24 of 4 0.34Down
S2 cells (growing)103 ± 04 of 4 0.77None
Whole fly134 ± 104 of 4



(CG9062):

Annotation Number : CG9062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033607
Gbrowse : chr2R:7168484-7171461 (-) // 100.0 //
Probeset : 1624010_a_at
Accessions : protein= NP_725018;, nucleotide= NM_165814;
FlyMine data for FBgn0033607.
BDGP gene expression has embryonic in situ data for CG9062: 4 pix of staining in 1 body parts.
Homophila reports that CG9062 is a close match (2e-13) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
VDRC has 1 RNAi stocks for FBgn0033607 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 ± 14 of 4 0.80None
Head51 ± 44 of 4 0.60Down
Eye35 ± 14 of 4 0.44Down
Thoracicoabdominal ganglion54 ± 64 of 4 0.70Down
Salivary gland63 ± 84 of 4 0.78None
Crop62 ± 24 of 4 0.80Down
Midgut57 ± 04 of 4 0.70Down
Tubule88 ± 154 of 4 1.10None
Hindgut57 ± 44 of 4 0.70Down
Heart18 ± 24 of 4 0.23Down
Fat body30 ± 34 of 4 0.37Down
Ovary206 ± 64 of 4 2.50Up
Testis102 ± 44 of 4 1.30Up
Male accessory glands169 ± 44 of 4 2.10Up
Virgin spermatheca20 ± 14 of 4 0.25Down
Mated spermatheca29 ± 34 of 4 0.36Down
Adult carcass35 ± 24 of 4 0.40Down
Larval CNS72 ± 94 of 4 0.89None
Larval Salivary gland81 ± 74 of 4 1.00None
Larval midgut59 ± 63 of 4 0.73Down
Larval tubule195 ± 164 of 4 2.40Up
Larval hindgut52 ± 44 of 4 0.64Down
Larval fat body49 ± 104 of 4 0.60Down
Larval trachea41 ± 44 of 4 0.50Down
Larval carcass42 ± 04 of 4 0.52Down
S2 cells (growing)74 ± 34 of 4 0.92None
Whole fly81 ± 44 of 4

Looking for FBgn0033607. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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