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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033608 through 18771 annotations produced 1 hits



(CG13220):

Annotation Number : CG13220
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033608
Gbrowse : chr2R:7171920-7172605 (+) // 100.0 //
Probeset : 1640175_at
Accessions : protein= NP_610664;, nucleotide= NM_136820;
FlyMine data for FBgn0033608.
BDGP gene expression has embryonic in situ data for CG13220: 11 pix of staining in 13 body parts.
BioGrid reports that CG13220 interacts with CG2608 CG4303 CG6578 CG7808 .
VDRC has 1 RNAi stocks for FBgn0033608 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain405 ± 104 of 4 0.80Down
Head507 ± 74 of 4 1.00None
Eye604 ± 114 of 4 1.17Up
Thoracicoabdominal ganglion570 ± 124 of 4 1.10None
Salivary gland504 ± 154 of 4 0.97None
Crop491 ± 204 of 4 1.00None
Midgut434 ± 114 of 4 0.80Down
Tubule546 ± 274 of 4 1.10None
Hindgut571 ± 104 of 4 1.10None
Heart638 ± 234 of 4 1.24Up
Fat body576 ± 494 of 4 1.11None
Ovary602 ± 114 of 4 1.20Up
Testis510 ± 64 of 4 1.00None
Male accessory glands561 ± 194 of 4 1.10None
Virgin spermatheca414 ± 254 of 4 0.80Down
Mated spermatheca424 ± 194 of 4 0.82Down
Adult carcass632 ± 134 of 4 1.20Up
Larval CNS506 ± 214 of 4 0.98None
Larval Salivary gland583 ± 184 of 4 1.13None
Larval midgut474 ± 364 of 4 0.92None
Larval tubule420 ± 114 of 4 0.80Down
Larval hindgut649 ± 404 of 4 1.26Up
Larval fat body474 ± 74 of 4 0.90None
Larval trachea567 ± 514 of 4 1.10None
Larval carcass679 ± 814 of 4 1.32None
S2 cells (growing)404 ± 34 of 4 0.78Down
Whole fly517 ± 204 of 4

Looking for FBgn0033608. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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