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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033609 through 18771 annotations produced 1 hits



CG13213 (fbl6):

Annotation Number : CG13213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033609
Gbrowse : chr2R:7172654-7177253 (-) // 100.0 //
Probeset : 1641381_s_at
Accessions : protein= NP_610665; /// NP_725019; /// NP_725020;, nucleotide= NM_136821; /// NM_165815; /// NM_165816;
FlyMine data for FBgn0033609.
BioGrid reports that CG13213 interacts with CG3166 .
TRiP has 1 RNAi stocks for FBgn0033609 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033609 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain279 ± 204 of 4 2.60Up
Head148 ± 44 of 4 1.40Up
Eye178 ± 44 of 4 1.68Up
Thoracicoabdominal ganglion201 ± 44 of 4 1.90Up
Salivary gland145 ± 44 of 4 1.37Up
Crop139 ± 44 of 4 1.30Up
Midgut80 ± 24 of 4 0.80Down
Tubule191 ± 114 of 4 1.80Up
Hindgut103 ± 34 of 4 1.00None
Heart82 ± 64 of 4 0.77Down
Fat body82 ± 74 of 4 0.77Down
Ovary269 ± 24 of 4 2.50Up
Testis25 ± 24 of 4 0.20Down
Male accessory glands165 ± 64 of 4 1.60Up
Virgin spermatheca191 ± 134 of 4 1.80Up
Mated spermatheca183 ± 164 of 4 1.72Up
Adult carcass95 ± 94 of 4 0.90None
Larval CNS311 ± 264 of 4 2.92Up
Larval Salivary gland184 ± 34 of 4 1.73Up
Larval midgut69 ± 54 of 4 0.66Down
Larval tubule126 ± 74 of 4 1.20None
Larval hindgut104 ± 34 of 4 0.98None
Larval fat body121 ± 84 of 4 1.10None
Larval trachea218 ± 124 of 4 2.05Up
Larval carcass117 ± 104 of 4 1.10None
S2 cells (growing)119 ± 34 of 4 1.12Up
Whole fly106 ± 34 of 4

Looking for FBgn0033609. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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