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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033624 through 18771 annotations produced 1 hits



(CG12384):

Annotation Number : CG12384
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033624
Gbrowse : chr2R:7245404-7246658 (-) // 100.0 //
Probeset : 1627768_at
Accessions : protein= NP_610676;, nucleotide= NM_136832;
FlyMine data for FBgn0033624.
BDGP gene expression has embryonic in situ data for CG12384: 12 pix of staining in 10 body parts.
VDRC has 2 RNAi stocks for FBgn0033624 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain502 ± 114 of 4 0.90None
Head714 ± 174 of 4 1.30Up
Eye577 ± 214 of 4 1.08None
Thoracicoabdominal ganglion552 ± 104 of 4 1.00None
Salivary gland1773 ± 874 of 4 3.31Up
Crop1084 ± 84 of 4 2.00Up
Midgut1195 ± 334 of 4 2.20Up
Tubule678 ± 264 of 4 1.30Up
Hindgut1022 ± 174 of 4 1.90Up
Heart731 ± 204 of 4 1.36Up
Fat body980 ± 534 of 4 1.83Up
Ovary517 ± 134 of 4 1.00None
Testis195 ± 84 of 4 0.40Down
Male accessory glands1693 ± 294 of 4 3.20Up
Virgin spermatheca911 ± 344 of 4 1.70Up
Mated spermatheca888 ± 554 of 4 1.66Up
Adult carcass634 ± 274 of 4 1.20Up
Larval CNS589 ± 404 of 4 1.10None
Larval Salivary gland2876 ± 454 of 4 5.36Up
Larval midgut1174 ± 884 of 4 2.19Up
Larval tubule1637 ± 474 of 4 3.10Up
Larval hindgut1207 ± 514 of 4 2.25Up
Larval fat body2336 ± 2474 of 4 4.40Up
Larval trachea1405 ± 624 of 4 2.62Up
Larval carcass835 ± 534 of 4 1.56Up
S2 cells (growing)710 ± 54 of 4 1.32Up
Whole fly536 ± 174 of 4

Looking for FBgn0033624. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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