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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033628 through 18771 annotations produced 1 hits



(CG13203):

Annotation Number : CG13203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033628
Gbrowse : chr2R:7261483-7264326 (+) // 100.0 //
Probeset : 1628436_at
Accessions : protein= NP_001027404; /// NP_610680;, nucleotide= NM_001032233; /// NM_136836;
FlyMine data for FBgn0033628.
BDGP gene expression has embryonic in situ data for CG13203: 13 pix of staining in 6 body parts.
VDRC has 3 RNAi stocks for FBgn0033628 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 2.00Up
Head12 ± 11 of 4 1.80Up
Eye4 ± 00 of 4 0.59None
Thoracicoabdominal ganglion14 ± 03 of 4 2.10Up
Salivary gland11 ± 30 of 4 1.64None
Crop3 ± 00 of 4 0.50None
Midgut11 ± 30 of 4 1.60None
Tubule4 ± 00 of 4 0.60Down
Hindgut9 ± 10 of 4 1.40None
Heart6 ± 11 of 4 0.95None
Fat body8 ± 40 of 4 1.13None
Ovary6 ± 00 of 4 0.90None
Testis26 ± 14 of 4 3.80Up
Male accessory glands9 ± 10 of 4 1.30None
Virgin spermatheca8 ± 00 of 4 1.17None
Mated spermatheca6 ± 20 of 4 0.93None
Adult carcass12 ± 20 of 4 1.70None
Larval CNS20 ± 24 of 4 2.83Up
Larval Salivary gland7 ± 21 of 4 1.02None
Larval midgut6 ± 20 of 4 0.95None
Larval tubule4 ± 20 of 4 0.70None
Larval hindgut4 ± 10 of 4 0.68None
Larval fat body19 ± 23 of 4 2.70Up
Larval trachea6 ± 20 of 4 0.96None
Larval carcass5 ± 10 of 4 0.80None
S2 cells (growing)8 ± 10 of 4 1.21None
Whole fly7 ± 10 of 4

Looking for FBgn0033628. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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