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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033629 through 18771 annotations produced 1 hits



Tetraspanin 47F (Tsp47F):

Annotation Number : CG9033
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033629
Gbrowse : chr2R:7265035-7266532 (-) // 100.0 //
Probeset : 1629058_a_at
Accessions : protein= NP_523696; /// NP_725044;, nucleotide= NM_078972; /// NM_165828;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0033629.
Homophila reports that CG9033 is a close match (3e-12) to human gene CD151;MER2;PETA3;SFA1 (NP_620599), a gene associated with Nephropathy with pretibial epidermolysis bullosa and deafness, 609057 (3);[Blood group, Raph], 179620 (3).
VDRC has 2 RNAi stocks for FBgn0033629 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20None
Head43 30 of 4 8.80Up
Eye6 20 of 4 1.34None
Thoracicoabdominal ganglion2 10 of 4 0.40None
Salivary gland4 20 of 4 0.90None
Crop1 00 of 4 0.30None
Midgut4 10 of 4 0.90None
Tubule1 00 of 4 0.40Down
Hindgut1 00 of 4 0.30None
Heart0 00 of 4 0.09None
Fat body1 00 of 4 0.22None
Ovary1 00 of 4 0.30None
Testis3 10 of 4 0.60None
Male accessory glands1 00 of 4 0.20None
Virgin spermatheca1 00 of 4 0.31None
Mated spermatheca1 00 of 4 0.29None
Adult carcass13 20 of 4 2.80Up
Larval CNS3 10 of 4 0.62None
Larval Salivary gland7 20 of 4 1.49None
Larval midgut3 10 of 4 0.66None
Larval tubule3 10 of 4 0.70None
Larval hindgut3 00 of 4 0.69None
Larval fat body5 30 of 4 1.20None
Larval trachea2 20 of 4 0.59None
Larval carcass6 10 of 4 1.41None
S2 cells (growing)1 00 of 4 0.26None
Whole fly4 20 of 4

Looking for FBgn0033629. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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