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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033631 through 18771 annotations produced 1 hits


Annotation Number : CG9027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033631
Gbrowse : chr2R:7268821-7271613 (-) // 100.0 //
Probeset : 1636961_a_at
Accessions : protein= NP_001033939; /// NP_001036536; /// NP_610682; /// NP_725046;, nucleotide= NM_001038850; /// NM_001043071; /// NM_136838; /// NM_165829;
Interpro : 0004784 // superoxide dismutase activity // inferred from sequence or structural similarity /// 0004784 // superoxide di
FlyMine data for FBgn0033631.
Homophila reports that CG9027 is a close match (7e-17) to human gene SOD3 (NP_003093), a gene associated with [Superoxide dismutase, elevated extracellular] (3).
BioGrid reports that CG9027 interacts with CG9986 CG13511 CG13857 CG17777 CG4164 CG4491 CG5422 CG9027 Dmel CG34205 CG13678 CG13731 CG13840 CG16772 CG4711 CG17946 CG32354 CG3918 CG8541 CG9184 CG9572 CG9588 CG17161 .
VDRC has 1 RNAi stocks for FBgn0033631 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1337 294 of 4 2.70Up
Head709 304 of 4 1.40Up
Eye406 374 of 4 0.82None
Thoracicoabdominal ganglion1770 434 of 4 3.60Up
Salivary gland100 134 of 4 0.20Down
Crop150 74 of 4 0.30Down
Midgut108 44 of 4 0.20Down
Tubule276 214 of 4 0.60Down
Hindgut679 44 of 4 1.40Up
Heart70 54 of 4 0.14Down
Fat body44 14 of 4 0.09Down
Ovary964 164 of 4 2.00Up
Testis130 54 of 4 0.30Down
Male accessory glands299 624 of 4 0.60Down
Virgin spermatheca251 54 of 4 0.51Down
Mated spermatheca278 134 of 4 0.56Down
Adult carcass188 124 of 4 0.40Down
Larval CNS154 274 of 4 0.31Down
Larval Salivary gland29 24 of 4 0.06Down
Larval midgut177 84 of 4 0.36Down
Larval tubule127 174 of 4 0.30Down
Larval hindgut292 114 of 4 0.59Down
Larval fat body475 384 of 4 1.00None
Larval trachea1033 1664 of 4 2.09Up
Larval carcass727 974 of 4 1.47None
S2 cells (growing)9 00 of 4 0.02Down
Whole fly494 424 of 4

Looking for FBgn0033631. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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