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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033635 through 18771 annotations produced 2 hits



(CG7777):

Annotation Number : CG7777
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033635
Gbrowse : chr2R:7323750-7329728 (+) // 100.0 //
Probeset : 1625950_a_at
Accessions : protein= NP_610686; /// NP_725052;, nucleotide= NM_136842; /// NM_165834;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005372 // water transmembrane transporter ac
FlyMine data for FBgn0033635.
BDGP gene expression has embryonic in situ data for CG7777: 19 pix of staining in 7 body parts.
Homophila reports that CG7777 is a close match (1e-13) to human gene AQP3 (NP_004916), a gene associated with [Blood group GIL], 607457 (3).
VDRC has 1 RNAi stocks for FBgn0033635 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain109 ± 44 of 4 0.10Down
Head211 ± 144 of 4 0.20Down
Eye53 ± 34 of 4 0.05Down
Thoracicoabdominal ganglion1805 ± 604 of 4 1.80Up
Salivary gland2488 ± 944 of 4 2.43Up
Crop131 ± 84 of 4 0.10Down
Midgut731 ± 244 of 4 0.70Down
Tubule1188 ± 1734 of 4 1.20None
Hindgut570 ± 234 of 4 0.60Down
Heart325 ± 124 of 4 0.32Down
Fat body74 ± 244 of 4 0.07Down
Ovary1807 ± 424 of 4 1.80Up
Testis38 ± 24 of 4 0.00Down
Male accessory glands883 ± 584 of 4 0.90None
Virgin spermatheca2197 ± 434 of 4 2.14Up
Mated spermatheca2169 ± 1574 of 4 2.12Up
Adult carcass307 ± 254 of 4 0.30Down
Larval CNS151 ± 254 of 4 0.15Down
Larval Salivary gland247 ± 364 of 4 0.24Down
Larval midgut310 ± 324 of 4 0.30Down
Larval tubule1785 ± 824 of 4 1.70Up
Larval hindgut1738 ± 364 of 4 1.70Up
Larval fat body313 ± 574 of 4 0.30Down
Larval trachea642 ± 714 of 4 0.63Down
Larval carcass926 ± 1224 of 4 0.90None
S2 cells (growing)628 ± 344 of 4 0.61Down
Whole fly1025 ± 864 of 4



(CG7777):

Annotation Number : CG7777
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033635
Gbrowse : chr2R:7323750-7329728 (+) // 100.0 //
Probeset : 1630030_at
Accessions : protein= NP_610686; /// NP_725052;, nucleotide= NM_136842; /// NM_165834;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005372 // water transmembrane transporter ac
FlyMine data for FBgn0033635.
BDGP gene expression has embryonic in situ data for CG7777: 19 pix of staining in 7 body parts.
Homophila reports that CG7777 is a close match (1e-13) to human gene AQP3 (NP_004916), a gene associated with [Blood group GIL], 607457 (3).
VDRC has 1 RNAi stocks for FBgn0033635 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.00Down
Salivary gland15 ± 11 of 4 0.13Down
Crop3 ± 10 of 4 0.00Down
Midgut8 ± 00 of 4 0.10Down
Tubule6 ± 10 of 4 0.10Down
Hindgut5 ± 10 of 4 0.00Down
Heart5 ± 10 of 4 0.04Down
Fat body7 ± 40 of 4 0.06Down
Ovary339 ± 134 of 4 2.90Up
Testis1 ± 00 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca7 ± 10 of 4 0.06Down
Mated spermatheca3 ± 10 of 4 0.03Down
Adult carcass14 ± 22 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland4 ± 00 of 4 0.04Down
Larval midgut23 ± 42 of 4 0.20Down
Larval tubule7 ± 22 of 4 0.10Down
Larval hindgut9 ± 11 of 4 0.08Down
Larval fat body4 ± 10 of 4 0.00Down
Larval trachea5 ± 10 of 4 0.05Down
Larval carcass9 ± 30 of 4 0.08Down
S2 cells (growing)8 ± 00 of 4 0.07Down
Whole fly116 ± 94 of 4

Looking for FBgn0033635. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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