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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033638 through 18771 annotations produced 1 hits



(CG9005):

Annotation Number : CG9005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033638
Gbrowse : chr2R:7507692-7520075 (-) // 100.0 //
Probeset : 1624211_at
Accessions : protein= NP_001163118; /// NP_610688;, nucleotide= NM_001169647; /// NM_136844;
FlyMine data for FBgn0033638.
BDGP gene expression has embryonic in situ data for CG9005: 33 pix of staining in 27 body parts.
TRiP has 1 RNAi stocks for FBgn0033638 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033638 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain292 ± 114 of 4 2.40Up
Head88 ± 114 of 4 0.70Down
Eye137 ± 94 of 4 1.12None
Thoracicoabdominal ganglion221 ± 124 of 4 1.80Up
Salivary gland196 ± 124 of 4 1.59Up
Crop177 ± 124 of 4 1.40Up
Midgut118 ± 44 of 4 1.00None
Tubule87 ± 94 of 4 0.70Down
Hindgut159 ± 94 of 4 1.30Up
Heart210 ± 144 of 4 1.70Up
Fat body135 ± 154 of 4 1.10None
Ovary164 ± 44 of 4 1.30Up
Testis28 ± 44 of 4 0.20Down
Male accessory glands84 ± 34 of 4 0.70Down
Virgin spermatheca140 ± 74 of 4 1.14None
Mated spermatheca149 ± 54 of 4 1.21Up
Adult carcass184 ± 164 of 4 1.50Up
Larval CNS56 ± 24 of 4 0.46Down
Larval Salivary gland41 ± 14 of 4 0.34Down
Larval midgut110 ± 304 of 4 0.89None
Larval tubule256 ± 174 of 4 2.10Up
Larval hindgut80 ± 64 of 4 0.65Down
Larval fat body210 ± 174 of 4 1.70Up
Larval trachea45 ± 134 of 4 0.37Down
Larval carcass132 ± 384 of 4 1.07None
S2 cells (growing)33 ± 24 of 4 0.27Down
Whole fly123 ± 54 of 4

Looking for FBgn0033638. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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