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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033639 through 18771 annotations produced 1 hits



(CG9003):

Annotation Number : CG9003
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033639
Gbrowse : chr2R:7530693-7533154 (-) // 100.0 //
Probeset : 1632543_at
Accessions : protein= NP_001097271; /// NP_001097272; /// NP_001097273; /// NP_610689;, nucleotide= NM_001103801; /// NM_001103802; /// NM_001103803; /// NM_136845;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0033639.
TRiP has 1 RNAi stocks for FBgn0033639 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033639 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain169 94 of 4 1.70Up
Head85 74 of 4 0.90None
Eye47 34 of 4 0.48Down
Thoracicoabdominal ganglion174 104 of 4 1.80Up
Salivary gland181 84 of 4 1.83Up
Crop118 54 of 4 1.20None
Midgut100 54 of 4 1.00None
Tubule106 24 of 4 1.10Up
Hindgut97 34 of 4 1.00None
Heart82 34 of 4 0.83None
Fat body77 124 of 4 0.79None
Ovary150 24 of 4 1.50Up
Testis92 54 of 4 0.90None
Male accessory glands47 24 of 4 0.50Down
Virgin spermatheca29 34 of 4 0.29Down
Mated spermatheca23 34 of 4 0.23Down
Adult carcass89 64 of 4 0.90None
Larval CNS94 134 of 4 0.95None
Larval Salivary gland50 14 of 4 0.51Down
Larval midgut149 294 of 4 1.50None
Larval tubule476 484 of 4 4.80Up
Larval hindgut94 74 of 4 0.95None
Larval fat body125 104 of 4 1.30None
Larval trachea45 64 of 4 0.46Down
Larval carcass115 434 of 4 1.16None
S2 cells (growing)76 14 of 4 0.77Down
Whole fly99 64 of 4

Looking for FBgn0033639. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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