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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033640 through 18771 annotations produced 1 hits


Annotation Number : CG13198
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033640
Gbrowse : chr2R:7542402-7543267 (+) // 100.0 //
Probeset : 1634921_at
Accessions : protein= NP_610690;, nucleotide= NM_136846;
FlyMine data for FBgn0033640.
VDRC has 2 RNAi stocks for FBgn0033640 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.00None
Head2 10 of 4 0.90None
Eye5 11 of 4 2.02None
Thoracicoabdominal ganglion3 10 of 4 1.20None
Salivary gland29 50 of 410.17Up
Crop8 00 of 4 2.80Up
Midgut4 10 of 4 1.40None
Tubule4 00 of 4 1.60Up
Hindgut7 10 of 4 2.60None
Heart6 00 of 4 2.28Up
Fat body2 20 of 4 0.87None
Ovary2 10 of 4 0.90None
Testis1 00 of 4 0.60None
Male accessory glands10 00 of 4 3.70Up
Virgin spermatheca3 10 of 4 1.26None
Mated spermatheca2 10 of 4 0.90None
Adult carcass6 10 of 4 2.40None
Larval CNS2 10 of 4 0.95None
Larval Salivary gland2 10 of 4 1.01None
Larval midgut3 10 of 4 1.22None
Larval tubule4 10 of 4 1.40None
Larval hindgut1 10 of 4 0.61None
Larval fat body1 00 of 4 0.50None
Larval trachea1 00 of 4 0.36None
Larval carcass2 00 of 4 0.73None
S2 cells (growing)1 00 of 4 0.34None
Whole fly2 10 of 4

Looking for FBgn0033640. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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