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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033644 through 18771 annotations produced 1 hits



Trehalose transporter 1-2 (Tret1-2):

Annotation Number : CG8234
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033644
Gbrowse : chr2R:7563464-7565540 (+) // 100.0 //
Probeset : 1640537_a_at
Accessions : protein= NP_610694; /// NP_725070;, nucleotide= NM_136850; /// NM_165846;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005353 // fructose transmembrane transporter
FlyMine data for FBgn0033644.
BDGP gene expression has embryonic in situ data for CG8234: 18 pix of staining in 2 body parts.
Homophila reports that CG8234 is a close match (4e-20) to human gene ATS;GLUT10;SLC2A10 (NP_110404), a gene associated with Arterial tortuosity syndrome, 208050 (3).
VDRC has 2 RNAi stocks for FBgn0033644 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 12 of 4 0.60Down
Head23 ± 13 of 4 1.10None
Eye9 ± 11 of 4 0.43Down
Thoracicoabdominal ganglion12 ± 10 of 4 0.60Down
Salivary gland34 ± 02 of 4 1.61Up
Crop10 ± 10 of 4 0.50Down
Midgut7 ± 20 of 4 0.30Down
Tubule21 ± 13 of 4 1.00None
Hindgut26 ± 14 of 4 1.20Up
Heart22 ± 44 of 4 1.04None
Fat body107 ± 164 of 4 4.99Up
Ovary3 ± 00 of 4 0.20Down
Testis95 ± 44 of 4 4.40Up
Male accessory glands13 ± 20 of 4 0.60Down
Virgin spermatheca72 ± 64 of 4 3.38Up
Mated spermatheca53 ± 34 of 4 2.50Up
Adult carcass47 ± 44 of 4 2.20Up
Larval CNS7 ± 33 of 4 0.34Down
Larval Salivary gland11 ± 12 of 4 0.55Down
Larval midgut6 ± 10 of 4 0.30Down
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut9 ± 04 of 4 0.43Down
Larval fat body85 ± 64 of 4 4.00Up
Larval trachea5 ± 11 of 4 0.26Down
Larval carcass12 ± 24 of 4 0.56Down
S2 cells (growing)7 ± 10 of 4 0.35Down
Whole fly21 ± 11 of 4

Looking for FBgn0033644. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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