FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033645 through 18771 annotations produced 1 hits

(CG13196):

Annotation Number : CG13196
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033645
Gbrowse : chr2R:7571657-7573937 (-) // 99.8 //
Probeset : 1624123_at
Accessions : protein= NP_610695;, nucleotide= NM_136851;
FlyMine data for FBgn0033645.
BDGP gene expression has embryonic in situ data for CG13196: 15 pix of staining in 3 body parts.
BioGrid reports that CG13196 interacts with CG5866 .
VDRC has 3 RNAi stocks for FBgn0033645 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.60	None
Head	1 ± 0	0 of 4	0.30	None
Eye	2 ± 0	0 of 4	0.72	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.30	None
Salivary gland	6 ± 4	0 of 4	2.02	None
Crop	7 ± 1	1 of 4	2.40	Up
Midgut	2 ± 0	0 of 4	0.90	None
Tubule	5 ± 1	0 of 4	1.70	Up
Hindgut	3 ± 1	0 of 4	1.20	None
Heart	0 ± 0	0 of 4	0.17	None
Fat body	4 ± 5	0 of 4	1.44	None
Ovary	0 ± 0	0 of 4	0.20	None
Testis	1 ± 1	0 of 4	0.60	None
Male accessory glands	2 ± 1	0 of 4	0.90	None
Virgin spermatheca	10 ± 5	0 of 4	3.38	None
Mated spermatheca	19 ± 8	2 of 4	6.06	None
Adult carcass	4 ± 1	0 of 4	1.30	None
Larval CNS	2 ± 2	0 of 4	0.86	None
Larval Salivary gland	0 ± 0	0 of 4	0.26	None
Larval midgut	0 ± 0	0 of 4	0.22	None
Larval tubule	3 ± 1	0 of 4	1.20	None
Larval hindgut	1 ± 0	0 of 4	0.49	None
Larval fat body	2 ± 0	0 of 4	0.80	None
Larval trachea	2 ± 2	0 of 4	0.95	None
Larval carcass	1 ± 0	0 of 4	0.35	None
S2 cells (growing)	18 ± 1	4 of 4	5.91	Up
Whole fly	3 ± 1	0 of 4

Looking for FBgn0033645. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720