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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033648 through 18771 annotations produced 1 hits

CG13195 (Ir48b):

Annotation Number : CG13195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033648
Gbrowse : chr2R:7588151-7589954 (-) // 100.0 //
Probeset : 1628545_at
Accessions : protein= NP_610697;, nucleotide= NM_136853;
FlyMine data for FBgn0033648.
VDRC has 3 RNAi stocks for FBgn0033648 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head1 00 of 4 0.40None
Eye1 00 of 4 0.34None
Thoracicoabdominal ganglion4 10 of 4 1.30None
Salivary gland2 00 of 4 0.83None
Crop1 00 of 4 0.40None
Midgut1 00 of 4 0.50None
Tubule2 00 of 4 0.70None
Hindgut1 00 of 4 0.60None
Heart1 00 of 4 0.50None
Fat body2 10 of 4 0.82None
Ovary1 00 of 4 0.30None
Testis1 00 of 4 0.30None
Male accessory glands17 31 of 4 5.40Up
Virgin spermatheca0 00 of 4 0.16None
Mated spermatheca0 00 of 4 0.20None
Adult carcass6 20 of 4 1.90None
Larval CNS2 10 of 4 0.74None
Larval Salivary gland2 00 of 4 0.60None
Larval midgut1 00 of 4 0.31None
Larval tubule3 10 of 4 1.10None
Larval hindgut4 10 of 4 1.48None
Larval fat body1 00 of 4 0.40None
Larval trachea0 00 of 4 0.17None
Larval carcass3 10 of 4 1.18None
S2 cells (growing)2 00 of 4 0.72None
Whole fly3 20 of 4

Looking for FBgn0033648. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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