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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033649 through 18771 annotations produced 1 hits



pyramus (pyr):

Annotation Number : CG13194
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033649
Gbrowse : chr2R:7611427-7613805 (+) // 100.0 //
Probeset : 1631552_at
Accessions : protein= NP_001097275;, nucleotide= NM_001103805;
Interpro : 0005104 // fibroblast growth factor receptor binding // non-traceable author statement /// 0005104 // fibroblast growth
FlyMine data for FBgn0033649.
BioGrid reports that CG13194 interacts with CG8815 .
VDRC has 2 RNAi stocks for FBgn0033649 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 14 of 4 0.80None
Head48 ± 34 of 4 1.70Up
Eye113 ± 84 of 4 3.99Up
Thoracicoabdominal ganglion32 ± 14 of 4 1.10None
Salivary gland6 ± 10 of 4 0.24Down
Crop937 ± 164 of 433.10Up
Midgut46 ± 24 of 4 1.60Up
Tubule12 ± 13 of 4 0.50Down
Hindgut326 ± 124 of 411.50Up
Heart33 ± 24 of 4 1.17None
Fat body19 ± 34 of 4 0.68None
Ovary16 ± 14 of 4 0.60None
Testis12 ± 04 of 4 0.40Down
Male accessory glands97 ± 24 of 4 3.40Up
Virgin spermatheca33 ± 14 of 4 1.19None
Mated spermatheca50 ± 74 of 4 1.79None
Adult carcass21 ± 41 of 4 0.80None
Larval CNS57 ± 94 of 4 2.03Up
Larval Salivary gland2 ± 10 of 4 0.10Down
Larval midgut58 ± 54 of 4 2.07Up
Larval tubule27 ± 14 of 4 1.00None
Larval hindgut196 ± 164 of 4 6.92Up
Larval fat body29 ± 34 of 4 1.00None
Larval trachea50 ± 84 of 4 1.77Up
Larval carcass49 ± 44 of 4 1.74Up
S2 cells (growing)125 ± 154 of 4 4.42Up
Whole fly28 ± 44 of 4

Looking for FBgn0033649. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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