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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033654 through 18771 annotations produced 1 hits

Sine oculis-binding protein (Sobp):

Annotation Number : CG8991
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033654
Gbrowse : chr2R:7714667-7727035 (-) // 100.0 //
Probeset : 1632890_at
Accessions : protein= NP_610703;, nucleotide= NM_136859;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0033654.
BDGP gene expression has embryonic in situ data for CG8991: 31 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0033654 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033654 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 22 of 4 0.90None
Head14 23 of 4 1.20None
Eye22 44 of 4 1.86None
Thoracicoabdominal ganglion10 20 of 4 0.80None
Salivary gland4 10 of 4 0.33Down
Crop21 24 of 4 1.80Up
Midgut2 10 of 4 0.20Down
Tubule1 00 of 4 0.10Down
Hindgut11 11 of 4 1.00None
Heart8 11 of 4 0.69None
Fat body1 00 of 4 0.14Down
Ovary8 12 of 4 0.70None
Testis4 00 of 4 0.40Down
Male accessory glands2 00 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.09Down
Mated spermatheca1 00 of 4 0.11Down
Adult carcass40 84 of 4 3.30Up
Larval CNS8 30 of 4 0.65None
Larval Salivary gland3 10 of 4 0.26Down
Larval midgut3 10 of 4 0.27Down
Larval tubule5 10 of 4 0.50Down
Larval hindgut9 12 of 4 0.74None
Larval fat body1 00 of 4 0.10Down
Larval trachea2 00 of 4 0.19Down
Larval carcass48 64 of 4 3.96Up
S2 cells (growing)2 00 of 4 0.17Down
Whole fly12 03 of 4

Looking for FBgn0033654. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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