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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033657 through 18771 annotations produced 1 hits

Silnoon (Sln):

Annotation Number : CG8271
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033657
Gbrowse : chr2R:7732830-7739829 (+) // 100.0 //
Probeset : 1631649_at
Accessions : protein= NP_610706;, nucleotide= NM_136862;
Interpro : 0008028 // monocarboxylic acid transmembrane transporter activity // inferred from direct assay /// 0015355 // secondary
FlyMine data for FBgn0033657.
Homophila reports that CG8271 is a close match (6e-21) to human gene DXS128;SLC16A2;XPCT (NP_006508), a gene associated with Allan-Herndon-Dudley syndrome, 300523 (3).
VDRC has 3 RNAi stocks for FBgn0033657 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain365 134 of 420.30Up
Head84 24 of 4 4.70Up
Eye34 24 of 4 1.93Up
Thoracicoabdominal ganglion310 34 of 417.20Up
Salivary gland15 20 of 4 0.88None
Crop4 10 of 4 0.20Down
Midgut3 10 of 4 0.20Down
Tubule2 00 of 4 0.10Down
Hindgut5 11 of 4 0.30Down
Heart2 10 of 4 0.15Down
Fat body12 53 of 4 0.69None
Ovary2 00 of 4 0.10Down
Testis18 04 of 4 1.00None
Male accessory glands6 20 of 4 0.40Down
Virgin spermatheca1 00 of 4 0.08Down
Mated spermatheca2 00 of 4 0.15Down
Adult carcass15 42 of 4 0.90None
Larval CNS172 234 of 4 9.57Up
Larval Salivary gland5 12 of 4 0.32Down
Larval midgut3 10 of 4 0.20Down
Larval tubule2 10 of 4 0.20Down
Larval hindgut5 22 of 4 0.32Down
Larval fat body2 00 of 4 0.10Down
Larval trachea3 11 of 4 0.19Down
Larval carcass6 00 of 4 0.37Down
S2 cells (growing)4 11 of 4 0.23Down
Whole fly18 14 of 4

Looking for FBgn0033657. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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