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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033661 through 18771 annotations produced 1 hits



(CG13185):

Annotation Number : CG13185
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033661
Gbrowse : chr2R:7755380-7772951 (-) // 100.0 //
Probeset : 1635713_at
Accessions : protein= NP_001097278; /// NP_001097279;, nucleotide= NM_001103808; /// NM_001103809;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electr
FlyMine data for FBgn0033661.
BDGP gene expression has embryonic in situ data for CG13185: 25 pix of staining in 13 body parts.
BioGrid reports that CG13185 interacts with CG6363 .
TRiP has 1 RNAi stocks for FBgn0033661 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033661 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 14 of 4 0.30Down
Head38 24 of 4 0.40Down
Eye29 24 of 4 0.30Down
Thoracicoabdominal ganglion25 24 of 4 0.30Down
Salivary gland73 134 of 4 0.75None
Crop54 14 of 4 0.60Down
Midgut47 34 of 4 0.50Down
Tubule47 74 of 4 0.50Down
Hindgut34 14 of 4 0.40Down
Heart60 34 of 4 0.62Down
Fat body112 144 of 4 1.16None
Ovary301 174 of 4 3.10Up
Testis17 24 of 4 0.20Down
Male accessory glands133 64 of 4 1.40Up
Virgin spermatheca75 14 of 4 0.78None
Mated spermatheca108 54 of 4 1.12None
Adult carcass58 34 of 4 0.60Down
Larval CNS119 204 of 4 1.23None
Larval Salivary gland109 84 of 4 1.13None
Larval midgut44 14 of 4 0.46Down
Larval tubule30 24 of 4 0.30Down
Larval hindgut68 84 of 4 0.71None
Larval fat body21 24 of 4 0.20Down
Larval trachea107 264 of 4 1.11None
Larval carcass114 234 of 4 1.18None
S2 cells (growing)120 34 of 4 1.24None
Whole fly96 104 of 4

Looking for FBgn0033661. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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