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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033673 through 18771 annotations produced 1 hits



(CG8298):

Annotation Number : CG8298
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033673
Gbrowse : chr2R:7876637-7878946 (+) // 100.0 //
Probeset : 1637763_a_at
Accessions : protein= NP_610718; /// NP_725098;, nucleotide= NM_136874; /// NM_165860;
Interpro : "0004370 // glycerol kinase activity // inferred from sequence or structural similarity /// 0004370 // glycerol kinase a
FlyMine data for FBgn0033673.
BDGP gene expression has embryonic in situ data for CG8298: 4 pix of staining in 1 body parts.
Homophila reports that CG8298 is a close match (2e-93) to human gene GK (NP_976325), a gene associated with Glycerol kinase deficiency, 307030 (3).
TRiP has 2 RNAi stocks for FBgn0033673 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033673 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 ± 44 of 4 0.60Down
Head38 ± 24 of 4 0.30Down
Eye18 ± 24 of 4 0.17Down
Thoracicoabdominal ganglion92 ± 74 of 4 0.80None
Salivary gland23 ± 41 of 4 0.22Down
Crop60 ± 44 of 4 0.50Down
Midgut53 ± 64 of 4 0.50Down
Tubule66 ± 34 of 4 0.60Down
Hindgut50 ± 14 of 4 0.50Down
Heart35 ± 24 of 4 0.32Down
Fat body33 ± 04 of 4 0.30Down
Ovary267 ± 54 of 4 2.40Up
Testis421 ± 184 of 4 3.80Up
Male accessory glands23 ± 21 of 4 0.20Down
Virgin spermatheca34 ± 24 of 4 0.31Down
Mated spermatheca38 ± 14 of 4 0.35Down
Adult carcass46 ± 82 of 4 0.40Down
Larval CNS66 ± 44 of 4 0.60Down
Larval Salivary gland40 ± 34 of 4 0.37Down
Larval midgut46 ± 34 of 4 0.42Down
Larval tubule50 ± 14 of 4 0.50Down
Larval hindgut53 ± 34 of 4 0.48Down
Larval fat body91 ± 394 of 4 0.80None
Larval trachea40 ± 34 of 4 0.37Down
Larval carcass66 ± 74 of 4 0.60Down
S2 cells (growing)72 ± 14 of 4 0.65Down
Whole fly110 ± 84 of 4

Looking for FBgn0033673. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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