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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033677 through 18771 annotations produced 1 hits



(CG8321):

Annotation Number : CG8321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033677
Gbrowse : chr2R:7921452-7923765 (+) // 100.0 //
Probeset : 1638313_at
Accessions : protein= NP_610720;, nucleotide= NM_136876;
FlyMine data for FBgn0033677.
BDGP gene expression has embryonic in situ data for CG8321: 11 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0033677 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain298 ± 84 of 4 1.10None
Head342 ± 154 of 4 1.30Up
Eye669 ± 404 of 4 2.46Up
Thoracicoabdominal ganglion305 ± 154 of 4 1.10None
Salivary gland777 ± 364 of 4 2.85Up
Crop1078 ± 164 of 4 4.00Up
Midgut270 ± 44 of 4 1.00None
Tubule573 ± 314 of 4 2.10Up
Hindgut843 ± 134 of 4 3.10Up
Heart292 ± 124 of 4 1.07None
Fat body73 ± 104 of 4 0.27Down
Ovary530 ± 54 of 4 1.90Up
Testis35 ± 14 of 4 0.10Down
Male accessory glands156 ± 44 of 4 0.60Down
Virgin spermatheca290 ± 94 of 4 1.07None
Mated spermatheca345 ± 274 of 4 1.27None
Adult carcass173 ± 54 of 4 0.60Down
Larval CNS228 ± 94 of 4 0.84Down
Larval Salivary gland197 ± 104 of 4 0.73Down
Larval midgut293 ± 74 of 4 1.08None
Larval tubule178 ± 84 of 4 0.70Down
Larval hindgut439 ± 424 of 4 1.61Up
Larval fat body41 ± 34 of 4 0.20Down
Larval trachea360 ± 1084 of 4 1.32None
Larval carcass64 ± 74 of 4 0.24Down
S2 cells (growing)83 ± 44 of 4 0.31Down
Whole fly272 ± 144 of 4

Looking for FBgn0033677. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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