FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033679 through 18771 annotations produced 1 hits

chr2R:7952067-7967046 (-) // 100.0 // ():

Annotation Number : CG8888
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627430_at
Accessions : protein= , nucleotide= NP_610724;
Pathway : 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from
FlyMine data for full length.
Homophila reports that CG8888 is a close match (7e-15) to human gene HSD11B2;HSD11K (NP_000187), a gene associated with Apparent mineralocorticoid excess, hypertension due to (3);Hypertension, mild low-renin (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	19 ± 1	4 of 4	0.30	Down
Head	56 ± 6	4 of 4	0.90	None
Eye	15 ± 1	3 of 4	0.25	Down
Thoracicoabdominal ganglion	13 ± 0	2 of 4	0.20	Down
Salivary gland	20 ± 5	1 of 4	0.33	Down
Crop	957 ± 45	4 of 4	15.70	Up
Midgut	138 ± 3	4 of 4	2.30	Up
Tubule	22 ± 1	4 of 4	0.40	Down
Hindgut	214 ± 1	4 of 4	3.50	Up
Heart	850 ± 63	4 of 4	13.90	Up
Fat body	25 ± 17	3 of 4	0.42	Down
Ovary	8 ± 2	3 of 4	0.10	Down
Testis	29 ± 1	4 of 4	0.50	Down
Male accessory glands	314 ± 30	4 of 4	5.10	Up
Virgin spermatheca	15 ± 0	4 of 4	0.26	Down
Mated spermatheca	20 ± 0	4 of 4	0.33	Down
Adult carcass	127 ± 4	4 of 4	2.10	Up
Larval CNS	9 ± 3	3 of 4	0.16	Down
Larval Salivary gland	18 ± 2	0 of 4	0.30	Down
Larval midgut	71 ± 6	4 of 4	1.17	None
Larval tubule	11 ± 0	3 of 4	0.20	Down
Larval hindgut	306 ± 17	4 of 4	5.01	Up
Larval fat body	7 ± 4	0 of 4	0.10	Down
Larval trachea	112 ± 37	4 of 4	1.84	None
Larval carcass	2855 ± 202	4 of 4	46.69	Up
S2 cells (growing)	1 ± 0	0 of 4	0.02	Down
Whole fly	61 ± 6	4 of 4

Looking for FBgn0033679. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720