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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033683 through 18771 annotations produced 1 hits



(CG18343):

Annotation Number : CG18343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033683
Gbrowse : chr2R:8026306-8026781 (+) // 100.0 //
Probeset : 1627460_at
Accessions : protein= NP_610728;, nucleotide= NM_136884;
FlyMine data for FBgn0033683.
BioGrid reports that CG18343 interacts with Dmel CG34227 .
VDRC has 2 RNAi stocks for FBgn0033683 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 44 of 4 0.20Down
Head237 534 of 4 0.90None
Eye275 524 of 4 1.09None
Thoracicoabdominal ganglion62 44 of 4 0.20Down
Salivary gland2181 1464 of 4 8.63Up
Crop243 144 of 4 1.00None
Midgut556 154 of 4 2.20Up
Tubule236 154 of 4 0.90None
Hindgut370 214 of 4 1.50None
Heart684 964 of 4 2.71Up
Fat body659 844 of 4 2.61Up
Ovary76 44 of 4 0.30Down
Testis300 284 of 4 1.20None
Male accessory glands898 294 of 4 3.60Up
Virgin spermatheca1074 214 of 4 4.25Up
Mated spermatheca1015 624 of 4 4.02Up
Adult carcass458 254 of 4 1.80Up
Larval CNS90 254 of 4 0.36Down
Larval Salivary gland1053 1114 of 4 4.17Up
Larval midgut300 824 of 4 1.19None
Larval tubule483 474 of 4 1.90Up
Larval hindgut359 784 of 4 1.42None
Larval fat body691 694 of 4 2.70Up
Larval trachea775 564 of 4 3.07Up
Larval carcass510 294 of 4 2.02Up
S2 cells (growing)849 84 of 4 3.36Up
Whole fly252 484 of 4

Looking for FBgn0033683. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime