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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033687 through 18771 annotations produced 1 hits



(CG8407):

Annotation Number : CG8407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033687
Gbrowse : chr2R:8040965-8041731 (+) // 100.0 //
Probeset : 1635463_at
Accessions : protein= NP_001163124; /// NP_610734;, nucleotide= NM_001169653; /// NM_136890;
Pathway : 0005875 // microtubule associated complex // inferred from electronic annotation /// 0030286 // dynein complex // inferr
Interpro : "0003777 // microtubule motor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // infer
FlyMine data for FBgn0033687.
BioGrid reports that CG8407 interacts with CG9665 .
VDRC has 3 RNAi stocks for FBgn0033687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 14 of 4 0.40Down
Head6 ± 22 of 4 0.20Down
Eye4 ± 10 of 4 0.15Down
Thoracicoabdominal ganglion26 ± 24 of 4 0.80None
Salivary gland15 ± 60 of 4 0.49None
Crop1 ± 00 of 4 0.00Down
Midgut2 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.09Down
Fat body3 ± 20 of 4 0.10Down
Ovary0 ± 00 of 4 0.00Down
Testis433 ± 94 of 413.80Up
Male accessory glands2 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 00 of 4 0.10Down
Mated spermatheca2 ± 10 of 4 0.09Down
Adult carcass4 ± 20 of 4 0.10Down
Larval CNS52 ± 94 of 4 1.68Up
Larval Salivary gland5 ± 21 of 4 0.18Down
Larval midgut4 ± 10 of 4 0.13Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.12Down
Larval fat body34 ± 123 of 4 1.10None
Larval trachea4 ± 61 of 4 0.15Down
Larval carcass4 ± 10 of 4 0.14Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly31 ± 34 of 4

Looking for FBgn0033687. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime