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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033688 through 18771 annotations produced 1 hits



Prp8 (Prp8):

Annotation Number : CG8877
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033688
Gbrowse : chr2R:8041755-8050198 (-) // 100.0 //
Probeset : 1640679_at
Accessions : protein= NP_610735;, nucleotide= NM_136891;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0033688.
Homophila reports that CG8877 is a close match (0) to human gene PRPC8;PRPF8;RP13 (NP_006436), a gene associated with Retinitis pigmentosa-13, 600059 (3).
TRiP has 1 RNAi stocks for FBgn0033688 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033688 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 34 of 4 0.70Down
Head94 44 of 4 0.50Down
Eye114 44 of 4 0.56Down
Thoracicoabdominal ganglion121 64 of 4 0.60Down
Salivary gland166 174 of 4 0.81None
Crop124 34 of 4 0.60Down
Midgut125 64 of 4 0.60Down
Tubule188 44 of 4 0.90Down
Hindgut131 34 of 4 0.60Down
Heart113 74 of 4 0.55Down
Fat body126 104 of 4 0.62Down
Ovary478 54 of 4 2.30Up
Testis59 44 of 4 0.30Down
Male accessory glands186 34 of 4 0.90None
Virgin spermatheca118 44 of 4 0.58Down
Mated spermatheca145 24 of 4 0.71Down
Adult carcass107 84 of 4 0.50Down
Larval CNS589 264 of 4 2.88Up
Larval Salivary gland366 154 of 4 1.79Up
Larval midgut96 84 of 4 0.47Down
Larval tubule177 94 of 4 0.90None
Larval hindgut222 94 of 4 1.09None
Larval fat body95 84 of 4 0.50Down
Larval trachea291 344 of 4 1.42Up
Larval carcass238 84 of 4 1.16None
S2 cells (growing)434 94 of 4 2.12Up
Whole fly204 124 of 4

Looking for FBgn0033688. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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