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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033690 through 18771 annotations produced 1 hits



CG8862 (EndoG):

Annotation Number : CG8862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033690
Gbrowse : chr2R:8064953-8066035 (-) // 99.63 //
Probeset : 1632094_at
Accessions : protein= NP_610737;, nucleotide= NM_136893;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004520 // endodeoxyribonuclease activity //
FlyMine data for FBgn0033690.
VDRC has 3 RNAi stocks for FBgn0033690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 ± 24 of 4 0.70Down
Head76 ± 14 of 4 0.50Down
Eye58 ± 34 of 4 0.36Down
Thoracicoabdominal ganglion89 ± 24 of 4 0.60Down
Salivary gland74 ± 44 of 4 0.46Down
Crop81 ± 14 of 4 0.50Down
Midgut148 ± 54 of 4 0.90None
Tubule84 ± 34 of 4 0.50Down
Hindgut96 ± 24 of 4 0.60Down
Heart91 ± 64 of 4 0.57Down
Fat body88 ± 64 of 4 0.55Down
Ovary261 ± 44 of 4 1.60Up
Testis40 ± 14 of 4 0.30Down
Male accessory glands64 ± 24 of 4 0.40Down
Virgin spermatheca47 ± 44 of 4 0.30Down
Mated spermatheca61 ± 14 of 4 0.38Down
Adult carcass78 ± 34 of 4 0.50Down
Larval CNS98 ± 54 of 4 0.61Down
Larval Salivary gland77 ± 34 of 4 0.48Down
Larval midgut104 ± 54 of 4 0.65Down
Larval tubule98 ± 24 of 4 0.60Down
Larval hindgut104 ± 64 of 4 0.65Down
Larval fat body59 ± 74 of 4 0.40Down
Larval trachea117 ± 114 of 4 0.73Down
Larval carcass66 ± 54 of 4 0.41Down
S2 cells (growing)85 ± 14 of 4 0.53Down
Whole fly161 ± 144 of 4

Looking for FBgn0033690. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime