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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033691 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2R:8066979-8067343 (-) // 100.0 //):

Annotation Number : CG8860
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1639419_at
Accessions : protein= , nucleotide=
Interpro : "0006605 // protein targeting // inferred from electronic annotation /// 0006616 // SRP-dependent cotranslational protei


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain442 164 of 4 0.50Down
Head838 214 of 4 0.90None
Eye777 144 of 4 0.87None
Thoracicoabdominal ganglion497 194 of 4 0.60Down
Salivary gland3068 654 of 4 3.43Up
Crop763 404 of 4 0.90None
Midgut1844 464 of 4 2.10Up
Tubule786 434 of 4 0.90Down
Hindgut710 374 of 4 0.80Down
Heart895 404 of 4 1.00None
Fat body1571 1914 of 4 1.76Up
Ovary1034 224 of 4 1.20None
Testis451 74 of 4 0.50Down
Male accessory glands1797 524 of 4 2.00Up
Virgin spermatheca1651 1024 of 4 1.84Up
Mated spermatheca1972 1804 of 4 2.20Up
Adult carcass1055 744 of 4 1.20None
Larval CNS1404 884 of 4 1.57Up
Larval Salivary gland5082 1434 of 4 5.68Up
Larval midgut1803 774 of 4 2.01Up
Larval tubule1529 364 of 4 1.70Up
Larval hindgut1458 674 of 4 1.63Up
Larval fat body3063 2954 of 4 3.40Up
Larval trachea1643 2194 of 4 1.84Up
Larval carcass1651 1764 of 4 1.84Up
S2 cells (growing)2129 484 of 4 2.38Up
Whole fly895 574 of 4

Looking for FBgn0033691. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime