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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033693 through 18771 annotations produced 2 hits



/// (CG13175 /// CG33964):

Annotation Number : CG33154
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033693 /// FBgn0053964
Gbrowse : chr2R:8070143-8073017 (+) // 100.0 //
Probeset : 1631278_a_at
Accessions : protein= NP_001033941; /// NP_610740;, nucleotide= NM_001038852; /// NM_136896;
FlyMine data for FBgn0033693 /// FBgn0053964.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 14 of 4 0.50Down
Head38 ± 14 of 4 0.50Down
Eye24 ± 14 of 4 0.33Down
Thoracicoabdominal ganglion45 ± 44 of 4 0.60Down
Salivary gland37 ± 23 of 4 0.49Down
Crop62 ± 24 of 4 0.80Down
Midgut58 ± 43 of 4 0.80Down
Tubule48 ± 24 of 4 0.60Down
Hindgut47 ± 24 of 4 0.60Down
Heart31 ± 24 of 4 0.42Down
Fat body51 ± 114 of 4 0.68Down
Ovary133 ± 54 of 4 1.80Up
Testis61 ± 14 of 4 0.80Down
Male accessory glands67 ± 84 of 4 0.90None
Virgin spermatheca50 ± 54 of 4 0.67Down
Mated spermatheca70 ± 44 of 4 0.94None
Adult carcass44 ± 53 of 4 0.60Down
Larval CNS65 ± 54 of 4 0.87None
Larval Salivary gland54 ± 24 of 4 0.72Down
Larval midgut41 ± 12 of 4 0.55Down
Larval tubule26 ± 04 of 4 0.30Down
Larval hindgut50 ± 14 of 4 0.67Down
Larval fat body30 ± 23 of 4 0.40Down
Larval trachea100 ± 124 of 4 1.33Up
Larval carcass71 ± 84 of 4 0.95None
S2 cells (growing)29 ± 04 of 4 0.39Down
Whole fly75 ± 34 of 4



/// (CG13175 /// CG33964):

Annotation Number : CT32415
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033693 /// FBgn0053964
Gbrowse : chr2R:8070738-8071044 (+) // 100.0 //
Probeset : 1638169_s_at
Accessions : protein= NP_001033941; /// NP_610740;, nucleotide= NM_001038852; /// NM_136896;
FlyMine data for FBgn0033693 /// FBgn0053964.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 04 of 4 0.80None
Head10 ± 12 of 4 0.50Down
Eye7 ± 20 of 4 0.32Down
Thoracicoabdominal ganglion22 ± 14 of 4 1.00None
Salivary gland14 ± 20 of 4 0.66None
Crop21 ± 24 of 4 1.00None
Midgut18 ± 01 of 4 0.80None
Tubule12 ± 12 of 4 0.60Down
Hindgut16 ± 14 of 4 0.70Down
Heart9 ± 12 of 4 0.42Down
Fat body15 ± 80 of 4 0.72None
Ovary41 ± 14 of 4 1.90Up
Testis12 ± 04 of 4 0.60Down
Male accessory glands18 ± 20 of 4 0.80None
Virgin spermatheca7 ± 10 of 4 0.33Down
Mated spermatheca7 ± 20 of 4 0.36Down
Adult carcass19 ± 41 of 4 0.90None
Larval CNS18 ± 24 of 4 0.85None
Larval Salivary gland15 ± 10 of 4 0.70Down
Larval midgut8 ± 20 of 4 0.38Down
Larval tubule15 ± 14 of 4 0.70Down
Larval hindgut14 ± 23 of 4 0.65Down
Larval fat body15 ± 10 of 4 0.70Down
Larval trachea13 ± 31 of 4 0.61Down
Larval carcass16 ± 14 of 4 0.76None
S2 cells (growing)12 ± 02 of 4 0.58Down
Whole fly21 ± 14 of 4

Looking for FBgn0033693. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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