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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033697 through 18771 annotations produced 1 hits



Cyp6t3 (Cyp6t3):

Annotation Number : CG8457
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033697
Gbrowse : chr2R:8078186-8079758 (+) // 100.0 //
Probeset : 1627974_at
Accessions : protein= NP_610745;, nucleotide= NM_136901;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0033697.
Homophila reports that CG8457 is a close match (2e-11) to human gene CYP2R1 (NP_078790), a gene associated with Rickets due to defect in vitamin D 25-hydroxylation, 600081 (3).
BioGrid reports that CG8457 interacts with CG8498 CG9032 .
VDRC has 2 RNAi stocks for FBgn0033697 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.40None
Head77 ± 54 of 4 8.40Up
Eye15 ± 13 of 4 1.70Up
Thoracicoabdominal ganglion1 ± 00 of 4 0.20Down
Salivary gland6 ± 20 of 4 0.67None
Crop5 ± 10 of 4 0.60None
Midgut1 ± 00 of 4 0.20Down
Tubule1 ± 00 of 4 0.20Down
Hindgut9 ± 20 of 4 1.00None
Heart5 ± 00 of 4 0.62None
Fat body20 ± 31 of 4 2.16Up
Ovary3 ± 10 of 4 0.40Down
Testis0 ± 00 of 4 0.10Down
Male accessory glands4 ± 10 of 4 0.40None
Virgin spermatheca11 ± 11 of 4 1.29None
Mated spermatheca10 ± 10 of 4 1.13None
Adult carcass17 ± 40 of 4 1.90None
Larval CNS2 ± 20 of 4 0.32Down
Larval Salivary gland4 ± 10 of 4 0.49None
Larval midgut1 ± 00 of 4 0.14Down
Larval tubule4 ± 10 of 4 0.50None
Larval hindgut2 ± 10 of 4 0.29Down
Larval fat body21 ± 21 of 4 2.30Up
Larval trachea3 ± 30 of 4 0.43None
Larval carcass4 ± 20 of 4 0.47None
S2 cells (growing)1 ± 00 of 4 0.15Down
Whole fly9 ± 11 of 4

Looking for FBgn0033697. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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