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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033699 through 18771 annotations produced 3 hits



Ribosomal protein S11 (RpS11):

Annotation Number : CG8857
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033699
Gbrowse : chr2R:8086887-8088333 (-) // 100.0 //
Probeset : 1630252_at
Accessions : protein= NP_725114; /// NP_725115;, nucleotide= NM_165868; /// NM_165869;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0033699.
BioGrid reports that CG8857 interacts with CG8933 CG9902 .
VDRC has 2 RNAi stocks for FBgn0033699 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain187 74 of 4 1.70Up
Head283 174 of 4 2.60Up
Eye418 414 of 4 3.86Up
Thoracicoabdominal ganglion34 24 of 4 0.30Down
Salivary gland17 60 of 4 0.16Down
Crop34 34 of 4 0.30Down
Midgut18 33 of 4 0.20Down
Tubule11 10 of 4 0.10Down
Hindgut151 94 of 4 1.40Up
Heart27 24 of 4 0.25Down
Fat body27 33 of 4 0.26Down
Ovary18 14 of 4 0.20Down
Testis11 30 of 4 0.10Down
Male accessory glands30 22 of 4 0.30Down
Virgin spermatheca15 10 of 4 0.15Down
Mated spermatheca12 21 of 4 0.12Down
Adult carcass359 464 of 4 3.30Up
Larval CNS69 54 of 4 0.64Down
Larval Salivary gland22 23 of 4 0.21Down
Larval midgut13 31 of 4 0.13Down
Larval tubule17 12 of 4 0.20Down
Larval hindgut35 34 of 4 0.32Down
Larval fat body34 30 of 4 0.30Down
Larval trachea31 74 of 4 0.29Down
Larval carcass40 44 of 4 0.37Down
S2 cells (growing)31 24 of 4 0.29Down
Whole fly108 54 of 4



Ribosomal protein S11 (RpS11):

Annotation Number : CG8857
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033699
Gbrowse : chr2R:8086887-8088333 (-) // 100.0 //
Probeset : 1638068_a_at
Accessions : protein= NP_725114; /// NP_725115;, nucleotide= NM_165868; /// NM_165869;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0033699.
BioGrid reports that CG8857 interacts with CG8933 CG9902 .
VDRC has 2 RNAi stocks for FBgn0033699 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2593 634 of 4 0.70Down
Head4262 1564 of 4 1.10None
Eye5627 824 of 4 1.47Up
Thoracicoabdominal ganglion3640 1064 of 4 1.00None
Salivary gland10995 4734 of 4 2.87Up
Crop5447 2824 of 4 1.40Up
Midgut4970 1074 of 4 1.30Up
Tubule5130 994 of 4 1.30Up
Hindgut4520 994 of 4 1.20None
Heart6013 3994 of 4 1.57Up
Fat body5426 6224 of 4 1.42Up
Ovary3141 364 of 4 0.80None
Testis1188 144 of 4 0.30Down
Male accessory glands8331 2474 of 4 2.20Up
Virgin spermatheca5731 2004 of 4 1.50Up
Mated spermatheca5828 2114 of 4 1.52Up
Adult carcass5170 2944 of 4 1.40Up
Larval CNS2629 1784 of 4 0.69Down
Larval Salivary gland7466 3984 of 4 1.95Up
Larval midgut4345 1534 of 4 1.14None
Larval tubule4422 934 of 4 1.20None
Larval hindgut4138 204 of 4 1.08None
Larval fat body7250 7574 of 4 1.90Up
Larval trachea5930 994 of 4 1.55Up
Larval carcass4204 2834 of 4 1.10None
S2 cells (growing)4270 724 of 4 1.12None
Whole fly3826 2524 of 4



Ribosomal protein S11 (RpS11):

Annotation Number : CG8857
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033699
Gbrowse : chr2R:8086523-8088333 (-) // 100.0 //
Probeset : 1639036_at
Accessions : protein= NP_725114; /// NP_725115;, nucleotide= NM_165868; /// NM_165869;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0033699.
BioGrid reports that CG8857 interacts with CG8933 CG9902 .
VDRC has 2 RNAi stocks for FBgn0033699 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 24 of 4 0.40Down
Head136 114 of 4 0.40Down
Eye168 124 of 4 0.48Down
Thoracicoabdominal ganglion298 224 of 4 0.80None
Salivary gland269 214 of 4 0.76None
Crop153 64 of 4 0.40Down
Midgut150 64 of 4 0.40Down
Tubule159 94 of 4 0.50Down
Hindgut190 74 of 4 0.50Down
Heart185 144 of 4 0.52Down
Fat body177 294 of 4 0.50Down
Ovary464 144 of 4 1.30Up
Testis28 24 of 4 0.10Down
Male accessory glands74 74 of 4 0.20Down
Virgin spermatheca545 344 of 4 1.54Up
Mated spermatheca499 174 of 4 1.41Up
Adult carcass139 124 of 4 0.40Down
Larval CNS862 714 of 4 2.44Up
Larval Salivary gland252 54 of 4 0.71Down
Larval midgut147 284 of 4 0.42Down
Larval tubule199 144 of 4 0.60Down
Larval hindgut341 374 of 4 0.97None
Larval fat body274 334 of 4 0.80None
Larval trachea839 1454 of 4 2.38Up
Larval carcass479 294 of 4 1.36Up
S2 cells (growing)1365 134 of 4 3.87Up
Whole fly353 274 of 4

Looking for FBgn0033699. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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