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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033701 through 18771 annotations produced 1 hits



(CG13171):

Annotation Number : CG13171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033701
Gbrowse : chr2R:8101534-8101855 (+) // 100.0 //
Probeset : 1638551_at
Accessions : protein= NP_610748;, nucleotide= NM_136904;
FlyMine data for FBgn0033701.
VDRC has 3 RNAi stocks for FBgn0033701 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head4 ± 10 of 4 0.20Down
Eye2 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.20Down
Salivary gland5 ± 10 of 4 0.26Down
Crop4 ± 10 of 4 0.20Down
Midgut6 ± 10 of 4 0.30Down
Tubule6 ± 00 of 4 0.30Down
Hindgut5 ± 10 of 4 0.20Down
Heart1 ± 00 of 4 0.07Down
Fat body6 ± 20 of 4 0.32Down
Ovary1 ± 00 of 4 0.10Down
Testis283 ± 44 of 413.50Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.14Down
Mated spermatheca3 ± 00 of 4 0.15Down
Adult carcass6 ± 10 of 4 0.30Down
Larval CNS2 ± 10 of 4 0.11Down
Larval Salivary gland5 ± 20 of 4 0.25Down
Larval midgut5 ± 10 of 4 0.28Down
Larval tubule7 ± 00 of 4 0.30Down
Larval hindgut5 ± 10 of 4 0.26Down
Larval fat body36 ± 113 of 4 1.70None
Larval trachea3 ± 20 of 4 0.18Down
Larval carcass5 ± 00 of 4 0.27Down
S2 cells (growing)4 ± 10 of 4 0.20Down
Whole fly21 ± 23 of 4

Looking for FBgn0033701. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime