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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033702 through 18771 annotations produced 1 hits


Annotation Number : CG8854
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033702
Gbrowse : chr2R:8111963-8114351 (-) // 100.0 //
Probeset : 1632959_at
Accessions : protein= NP_610749;, nucleotide= NM_136905;
FlyMine data for FBgn0033702.
BioGrid reports that CG8854 interacts with CG9654 CG9975 .
VDRC has 1 RNAi stocks for FBgn0033702 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.30Down
Head18 20 of 4 2.00Up
Eye9 10 of 4 1.02None
Thoracicoabdominal ganglion3 00 of 4 0.30Down
Salivary gland2 00 of 4 0.23Down
Crop56 24 of 4 6.10Up
Midgut1 00 of 4 0.10Down
Tubule3 00 of 4 0.40Down
Hindgut15 10 of 4 1.70Up
Heart8 10 of 4 0.94None
Fat body4 30 of 4 0.49None
Ovary1 00 of 4 0.20Down
Testis3 10 of 4 0.40Down
Male accessory glands3 20 of 4 0.40None
Virgin spermatheca2 10 of 4 0.24Down
Mated spermatheca3 10 of 4 0.34Down
Adult carcass43 60 of 4 4.70Up
Larval CNS0 10 of 4 0.09Down
Larval Salivary gland0 00 of 4 0.07Down
Larval midgut2 10 of 4 0.25Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut51 94 of 4 5.53Up
Larval fat body2 10 of 4 0.30Down
Larval trachea21 44 of 4 2.33Up
Larval carcass39 34 of 4 4.29Up
S2 cells (growing)1 00 of 4 0.20Down
Whole fly9 00 of 4

Looking for FBgn0033702. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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